Factsheet for Bra040740.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53640	Canola	cytosol	98.43	94.72
CDY50850	Canola	cytosol	96.08	92.45
AT4G16545.1	Thale cress	cytosol	64.31	62.6
Bra038484.1-P	Field mustard	cytosol	58.43	56.23
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	30.2	54.23
Bra038485.1-P	Field mustard	cytosol	42.35	48.0
Bra012705.1-P	Field mustard	cytosol	64.31	41.1
Bra012707.1-P	Field mustard	cytosol	38.04	39.43
Bra012708.1-P	Field mustard	cytosol	38.04	38.8
Bra008244.1-P	Field mustard	cytosol	41.57	37.46
Bra024932.1-P	Field mustard	cytosol	30.2	30.56
Bra022079.1-P	Field mustard	cytosol	23.92	30.35
Bra024930.1-P	Field mustard	cytosol	29.02	28.46
Bra022083.1-P	Field mustard	cytosol	20.78	28.34
Bra024976.1-P	Field mustard	cytosol	28.63	27.44
Bra034108.1-P	Field mustard	cytosol	25.1	27.23
Bra022051.1-P	Field mustard	cytosol	24.71	24.42
Bra022080.1-P	Field mustard	cytosol	9.8	22.94
Bra022085.2-P	Field mustard	cytosol	14.51	22.84
Bra002567.1-P	Field mustard	cytosol	25.49	17.06

Protein Annotations

EnsemblPlants:Bra040740.1	EnsemblPlants:Bra040740.1-P	EnsemblPlantsGene:Bra040740	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFscan:PS01031	SEG:seg
SUPFAM:SSF49764	UniParc:UPI000253E863	UniProt:M4FI11	MapMan:35.1	:	:

Description

AT4G16550 (E=9e-080) | heat shock protein-related

Coordinates

chrScaffold000247:-:12700..13778

Molecular Weight (calculated)

27984.8 Da

IEP (calculated)

7.218

GRAVY (calculated)

-0.151

Length

255 amino acids

Sequence
(BLAST)

001: MDGEDGFYAI NNQFLANGPK GFQELKTLEN EDMFIRVDFP GVPEDAMKVV VDDTKKAVTV FALAPKEHKH DSSPRNYIYT TGLVCKCCEI SAVAAHMSDG
101: VLRLLLSKTQ IATQRPPFLG VPDSEQVVVK DHAWTGSHKV TYGTDPHDSV LTGRVLQPHP WVKQGSLMSY ESKQLQNGCL YVRVDMPGVP KERFTVSVKS
201: GMVMVTGDAP AVSHDSGGRF YSGEVAMLSN PIDIPIRQIK IICKTGVIRL IIPPA

Best Arabidopsis Sequence Match ( AT4G16545.1 )
(BLAST)

001: MVVPLRAIPS SREGFYAINN QFQANGPKGF MEFKMLENED MYVRIDFPGV PRDGVRVFLD QSKKAVCIFA DAPKEHKYDY SERNYGTSTG LVCKCCEISG
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B7R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.