Factsheet for TraesCS6D01G004600.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, endoplasmic reticulum
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G005700.1	Wheat	endoplasmic reticulum	73.67	88.61
HORVU6Hr1G001640.1	Barley	endoplasmic reticulum	71.3	83.68
TraesCS6D01G004700.1	Wheat	endoplasmic reticulum	54.14	31.18
TraesCS6D01G005200.1	Wheat	golgi	53.55	30.78
TraesCS4D01G197000.1	Wheat	endoplasmic reticulum	8.88	19.87
TraesCS2D01G302900.1	Wheat	endoplasmic reticulum	19.82	14.86
TraesCS7D01G121800.1	Wheat	endoplasmic reticulum	23.67	14.71
TraesCS6D01G215100.1	Wheat	endoplasmic reticulum	17.75	14.39
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	20.71	13.54
TraesCS4D01G098400.1	Wheat	golgi	20.12	13.2
TraesCS1D01G106500.1	Wheat	endoplasmic reticulum	13.02	11.99
TraesCS5D01G241200.1	Wheat	golgi	13.02	10.0
Zm00001d019793_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6D01G004600.2	EnsemblPlantsGene:TraesCS6D01G004600	Gene3D:3.40.30.10	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	PANTHER:PTHR18929	PANTHER:PTHR18929:SF121
PFAM:PF00085	PFscan:PS51352	SEG:seg	SUPFAM:SSF52833	TIGR:cd02961	TIGR:cd02981
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:2169671..2171595

Molecular Weight (calculated)

37248.7 Da

IEP (calculated)

8.236

GRAVY (calculated)

-0.048

Length

338 amino acids

Sequence
(BLAST)

001: MSQSLERAAE AGRPAGGDAD VRRTRFKVSA DLSIASTPLP NTYALYPTPR RPAMAVMPMP TPRSLILLLL LATPFFILLP HPSAASVSHP DLILPKVVND
101: NEAHVVVLTA ANFSSFLAAR RHVVVDFYAP WCYWSCKLAP KYAAAASHLA DKGLDVALAK VDATQERQLA RAHGVEGYPT VLFFVDGVPR HYPYYGERTK
201: DAMVVWVSQR SVPEVQNVST IYEAEKIITG HGVAVLAFLD SRSGAHGDEL AAASRLEDMN SLYRAVNFYQ TTSPDVAKLF HIDPEAKRPS LVLLNKQEEK
301: LTLYDGEFRA SLIAKFVSDN KIPLITYHHH TGSRLSDI

Best Arabidopsis Sequence Match ( AT3G54960.1 )
(BLAST)

001: MASSSTSISL LLFVSFILLL VNSRAENASS GSDLDEELAF LAAEESKEQS HGGGSYHEEE HDHQHRDFEN YDDLEQGGGE FHHGDHGYEE EPLPPVDEKD
101: VAVLTKDNFT EFVGNNSFAM VEFYAPWCGA CQALTPEYAA AATELKGLAA LAKIDATEEG DLAQKYEIQG FPTVFLFVDG EMRKTYEGER TKDGIVTWLK
201: KKASPSIHNI TTKEEAERVL SAEPKLVFGF LNSLVGSESE ELAAASRLED DLSFYQTASP DIAKLFEIET QVKRPALVLL KKEEEKLARF DGNFTKTAIA
301: EFVSANKVPL VINFTREGAS LIFESSVKNQ LILFAKANES EKHLPTLREV AKSFKGKFVF VYVQMDNEDY GEAVSGFFGV TGAAPKVLVY TGNEDMRKFI
401: LDGELTVNNI KTLAEDFLAD KLKPFYKSDP LPENNDGDVK VIVGNNFDEI VLDESKDVLL EIYAPWCGHC QSFEPIYNKL GKYLKGIDSL VVAKMDGTSN
501: EHPRAKADGF PTILFFPGGN KSFDPIAVDV DRTVVELYKF LKKHASIPFK LEKPATPEPV ISTMKSDEKI EGDSSKDEL

Arabidopsis Description

PDIL1-3PDIL1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VF09]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.