Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G122500.2 | |
| TraesCS4B01G182400.1 | |
| TraesCS4D01G183400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42400.1 | TraesCS4A01G122500.2 | AT2G18790.1 | 22904146 |
| AT2G42400.1 | TraesCS4B01G182400.1 | AT2G18790.1 | 22904146 |
| AT2G42400.1 | TraesCS4D01G183400.1 | AT2G18790.1 | 22904146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G023830.1 | Barley | cytosol, plastid | 9.56 | 82.54 |
| TraesCS1D01G338300.2 | Wheat | nucleus | 87.87 | 81.99 |
| TraesCS1B01G349200.1 | Wheat | nucleus | 81.25 | 75.43 |
| HORVU5Hr1G058480.1 | Barley | cytosol, mitochondrion, nucleus | 10.85 | 71.95 |
| Zm00001d022145_P001 | Maize | cytosol | 13.6 | 70.48 |
| HORVU4Hr1G057240.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 10.29 | 70.0 |
| HORVU7Hr1G111470.1 | Barley | nucleus | 9.93 | 68.35 |
| HORVU2Hr1G042110.1 | Barley | cytosol, mitochondrion, nucleus | 11.95 | 59.63 |
| HORVU6Hr1G038800.6 | Barley | nucleus | 11.03 | 58.82 |
| Os05t0515700-01 | Rice | nucleus | 67.83 | 57.57 |
| EES18506 | Sorghum | nucleus, plastid | 61.76 | 55.17 |
| Zm00001d038704_P002 | Maize | plastid | 59.93 | 53.97 |
| PGSC0003DMT400058735 | Potato | cytosol | 31.25 | 51.36 |
| PGSC0003DMT400081241 | Potato | cytosol | 42.65 | 49.68 |
| CDX90157 | Canola | nucleus | 41.73 | 49.67 |
| Bra010864.1-P | Field mustard | nucleus | 41.73 | 49.56 |
| KRH20362 | Soybean | cytosol, nucleus, plastid | 43.38 | 49.37 |
| CDY35753 | Canola | nucleus | 41.54 | 49.34 |
| KRH50133 | Soybean | cytosol, nucleus, plastid | 43.2 | 49.27 |
| Solyc02g077450.2.1 | Tomato | cytosol, mitochondrion, nucleus | 42.28 | 49.25 |
| KRH32695 | Soybean | cytosol | 42.1 | 49.25 |
| KRH30880 | Soybean | cytosol | 41.54 | 49.24 |
| VIT_10s0003g00500.t01 | Wine grape | nucleus | 43.75 | 49.07 |
| Solyc10g008880.2.1 | Tomato | cytosol, mitochondrion | 42.46 | 48.43 |
| CDY34095 | Canola | nucleus | 42.28 | 48.42 |
| CDY30817 | Canola | nucleus | 42.46 | 47.83 |
| HORVU6Hr1G038750.11 | Barley | nucleus | 15.99 | 47.8 |
| AT1G28520.2 | Thale cress | nucleus | 42.46 | 47.53 |
| TraesCS3A01G291900.1 | Wheat | nucleus | 55.15 | 46.95 |
| GSMUA_Achr1P27380_001 | Banana | cytosol | 24.26 | 46.81 |
| VIT_12s0028g02670.t01 | Wine grape | mitochondrion, nucleus | 45.04 | 46.31 |
| HORVU4Hr1G057220.1 | Barley | nucleus | 15.44 | 46.15 |
| AT2G42400.1 | Thale cress | nucleus | 34.56 | 41.78 |
| GSMUA_Achr4P15020_001 | Banana | nucleus | 46.88 | 41.06 |
| KRH55846 | Soybean | nucleus | 36.03 | 41.0 |
| KRH25675 | Soybean | nucleus | 36.03 | 40.92 |
| CDX79871 | Canola | nucleus | 35.29 | 40.59 |
| Bra032913.1-P | Field mustard | mitochondrion, plastid | 42.28 | 40.49 |
| CDY64518 | Canola | nucleus | 34.74 | 40.3 |
| CDY47967 | Canola | nucleus | 35.48 | 39.88 |
| Bra004691.1-P | Field mustard | nucleus | 35.11 | 39.71 |
| Bra016879.1-P | Field mustard | nucleus | 35.11 | 39.46 |
| HORVU2Hr1G109410.1 | Barley | mitochondrion | 13.05 | 39.44 |
| CDY14829 | Canola | nucleus | 35.11 | 39.3 |
| GSMUA_Achr6P22210_001 | Banana | nucleus | 36.21 | 36.69 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G335900.1 | EnsemblPlantsGene:TraesCS1A01G335900 | PANTHER:PTHR33873 | PANTHER:PTHR33873:SF3 | SEG:seg | MapMan:15.5.36 |
Description
No Description!
Coordinates
chr1A:+:522950051..522953117
Molecular Weight (calculated)
59234.5 Da
IEP (calculated)
5.246
GRAVY (calculated)
-0.745
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDPTGGGG GSAAGKGPRS STRHQQFRDR AKTRVDDLQE IFSGLQSARK ESRSADAAVL EEQVHQMLRE WRAELSVASP ASSLQNSLGN NQGAADPPSE
101: TLRLLQLAIE EEDDATSKLA QPMQPSRQDG HQNLNPGLQV HGGTVDGGAD ASQQSMGHGM QGELADVANA LFSDQMYYID HELSIDDFLH GSNPDGLNNL
201: QGTDLLTTVG PSPSQYLGPK CALWDCGRPV RGSEECQDYC NPYHAGLALS DDGLLGTRPV MRPRGIDLKD GPLFDALCAK VQGKNVGIPV CEGAATSKSP
301: WNAHELFDLS LLEGESLREW LFFDRPRRAF ESGNRKQRSL PDYNGRGWHE SRKQVMKDFG GLKKSYYMDP QPSSNYEWHL FEYEINDSNT LALYRLEFKA
401: SDPKRSVKSK LGSSSLNEIQ QQMVKLSANS PVDNKRGARS KTKASQKDTN ANAYPALKAT NQAGASNAYE AVPLNIPNQA SAPSAYQTVA PNIPNQDSTS
501: NAYEDASQVD PMSYLNENVV YGPHLPYGYP DGKGDFYWNP SGGA
101: TLRLLQLAIE EEDDATSKLA QPMQPSRQDG HQNLNPGLQV HGGTVDGGAD ASQQSMGHGM QGELADVANA LFSDQMYYID HELSIDDFLH GSNPDGLNNL
201: QGTDLLTTVG PSPSQYLGPK CALWDCGRPV RGSEECQDYC NPYHAGLALS DDGLLGTRPV MRPRGIDLKD GPLFDALCAK VQGKNVGIPV CEGAATSKSP
301: WNAHELFDLS LLEGESLREW LFFDRPRRAF ESGNRKQRSL PDYNGRGWHE SRKQVMKDFG GLKKSYYMDP QPSSNYEWHL FEYEINDSNT LALYRLEFKA
401: SDPKRSVKSK LGSSSLNEIQ QQMVKLSANS PVDNKRGARS KTKASQKDTN ANAYPALKAT NQAGASNAYE AVPLNIPNQA SAPSAYQTVA PNIPNQDSTS
501: NAYEDASQVD PMSYLNENVV YGPHLPYGYP DGKGDFYWNP SGGA
001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP
Arabidopsis Description
VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.