Factsheet for VIT_12s0028g02670.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0077g00940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	VIT_05s0077g00940.t01	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g00500.t01	Wine grape	nucleus	69.57	75.88
Zm00001d022145_P001	Maize	cytosol	12.1	60.95
GSMUA_Achr1P27380_001	Banana	cytosol	29.68	55.67
GSMUA_Achr7P10980_001	Banana	mitochondrion, nucleus	52.93	55.23
KRH25675	Soybean	nucleus	49.72	54.91
KRH55846	Soybean	nucleus	49.34	54.6
Zm00001d041158_P001	Maize	cytosol	31.19	53.4
AT2G42400.1	Thale cress	nucleus	42.53	50.0
CDY64518	Canola	nucleus	44.23	49.89
CDY14829	Canola	nucleus	45.18	49.18
CDX79871	Canola	nucleus	43.86	49.05
Bra016879.1-P	Field mustard	nucleus	44.42	48.55
CDY47967	Canola	nucleus	44.23	48.35
Bra004691.1-P	Field mustard	nucleus	43.86	48.23
Zm00001d045641_P001	Maize	cytosol	34.59	47.29
GSMUA_Achr4P15020_001	Banana	nucleus	55.01	46.86
Os01t0753000-01	Rice	cytosol	47.07	46.63
HORVU3Hr1G023830.1	Barley	cytosol, plastid	5.48	46.03
Zm00001d043500_P006	Maize	mitochondrion	47.64	45.9
TraesCS3D01G291600.1	Wheat	mitochondrion	47.26	45.87
TraesCS1A01G335900.1	Wheat	nucleus	46.31	45.04
TraesCS3B01G326500.4	Wheat	mitochondrion	48.02	44.1
TraesCS1D01G338300.2	Wheat	nucleus	47.45	43.05
GSMUA_Achr6P22210_001	Banana	nucleus	43.67	43.02
HORVU5Hr1G058480.1	Barley	cytosol, mitochondrion, nucleus	6.62	42.68
TraesCS1B01G349200.1	Wheat	nucleus	47.26	42.66
HORVU1Hr1G076620.2	Barley	nucleus	47.26	42.52
EES18506	Sorghum	nucleus, plastid	48.39	42.04
Zm00001d038704_P002	Maize	plastid	46.12	40.4
TraesCS3A01G291900.1	Wheat	nucleus	48.39	40.06
KXG33380	Sorghum	mitochondrion	48.39	40.0
HORVU4Hr1G057240.1	Barley	cytosol, mitochondrion, nucleus, plastid	6.05	40.0
Os05t0515700-01	Rice	nucleus	48.39	39.94
Zm00001d012734_P002	Maize	cytosol	48.58	39.36
HORVU7Hr1G111470.1	Barley	nucleus	5.86	39.24
HORVU3Hr1G072260.1	Barley	plastid	48.39	38.97
GSMUA_Achr10P...	Banana	plasma membrane	56.33	38.8
HORVU2Hr1G042110.1	Barley	cytosol, mitochondrion, nucleus	7.75	37.61
HORVU6Hr1G038800.6	Barley	nucleus	6.99	36.27
HORVU2Hr1G109410.1	Barley	mitochondrion	10.78	31.67
HORVU6Hr1G038750.11	Barley	nucleus	10.78	31.32
HORVU4Hr1G057220.1	Barley	nucleus	10.59	30.77

Protein Annotations

EntrezGene:100262658	wikigene:100262658	MapMan:15.5.36	EMBL:AM487638	ProteinID:CAN71043	ProteinID:CAN71043.1
ProteinID:CCB47340	ProteinID:CCB47340.1	UniProt:F6H4X2	EMBL:FN595235	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0043565
GO:GO:0045893	GO:GO:0048574	GO:GO:0048578	EntrezGene:LOC100262658	wikigene:LOC100262658	PANTHER:PTHR33873
PANTHER:PTHR33873:SF4	UniParc:UPI0002108CEE	ArrayExpress:VIT_12s0028g02670	EnsemblPlantsGene:VIT_12s0028g02670	EnsemblPlants:VIT_12s0028g02670.t01	RefSeq:XP_002278626
RefSeq:XP_002278626.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:3462915..3470939

Molecular Weight (calculated)

59154.2 Da

IEP (calculated)

6.001

GRAVY (calculated)

-0.496

Length

529 amino acids

Sequence
(BLAST)

001: MENLPRLRRD WGQVLRRGSM RKGSKSNCKS ASHQLFKDKA KNRVDDLQGM FTNLQFARKE SRTSDVAVLE EQVHQMLREW KAELNEPSPA SSLLGGSLGS
101: FSADINRLLQ RCEEEDDATS ALVEPAALKP EPDVQSLQAG NSMAFQEDYL VNHASQDHCL LGFDQCKGSA FGLQNTVANN LEMTTQSDYN QFDMHQDFDH
201: ELFIGPMGLC GQDGVPNIPG LLPNICPPPS AFLGPKCALW DCPRPAQGSE WCQDYCSSFH ASLALNEGPP GMTPVLRPGG IGLKDGPLFA ALSAKTQGKD
301: VGIPECEGAA TSKSPWNAPE LFDLSVLEGE IIREWLFFDK PRRAFESGNR KQRSLPDYSG RGWHESRKQV MKEFGGLKRS YYMDPQPLTC FEWHLYEYEI
401: NHCDACALYR LELKLVDGKK SPKGKVINDS LADLQKQMGR LTAEFPTDVK RSTKGRTKVN KKVGARNIYS APNLMTPTAE TFSYGLSGSY NYLPENLADY
501: YVYLVPVHVQ LELFLCVMFS LKDDIFGEI

Best Arabidopsis Sequence Match ( AT1G28520.5 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.