Factsheet for TraesCS3B01G326500.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G122500.2
TraesCS4B01G182400.1
TraesCS4D01G183400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	TraesCS4A01G122500.2	AT2G18790.1	22904146
AT2G42400.1	TraesCS4B01G182400.1	AT2G18790.1	22904146
AT2G42400.1	TraesCS4D01G183400.1	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G291600.1	Wheat	mitochondrion	88.72	93.76
TraesCS3A01G291900.1	Wheat	nucleus	93.92	84.66
Os01t0753000-01	Rice	cytosol	72.4	78.09
HORVU3Hr1G072260.1	Barley	plastid	86.28	75.65
Zm00001d041158_P001	Maize	cytosol	39.41	73.46
Zm00001d043500_P006	Maize	mitochondrion	69.79	73.22
KXG33380	Sorghum	mitochondrion	69.1	62.19
Zm00001d012734_P002	Maize	cytosol	68.92	60.8
Zm00001d045641_P001	Maize	cytosol	38.72	57.62
TraesCS1B01G349200.1	Wheat	nucleus	57.64	56.66
PGSC0003DMT400058735	Potato	cytosol	30.56	53.17
KRH50133	Soybean	cytosol, nucleus, plastid	43.58	52.62
KRH20362	Soybean	cytosol, nucleus, plastid	43.23	52.09
Bra010864.1-P	Field mustard	nucleus	41.15	51.75
CDX90157	Canola	nucleus	40.97	51.64
VIT_10s0003g00500.t01	Wine grape	nucleus	43.23	51.34
KRH32695	Soybean	cytosol	41.32	51.18
KRH30880	Soybean	cytosol	40.62	50.98
PGSC0003DMT400081241	Potato	cytosol	41.32	50.96
CDY35753	Canola	nucleus	40.45	50.87
Solyc02g077450.2.1	Tomato	cytosol, mitochondrion, nucleus	40.97	50.54
AT1G28520.2	Thale cress	nucleus	41.84	49.59
CDY34095	Canola	nucleus	40.8	49.47
GSMUA_Achr1P27380_001	Banana	cytosol	24.13	49.29
CDY30817	Canola	nucleus	41.32	49.28
Solyc10g008880.2.1	Tomato	cytosol, mitochondrion	40.8	49.27
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	44.1	48.02
GSMUA_Achr4P15020_001	Banana	nucleus	48.26	44.77
AT2G42400.1	Thale cress	nucleus	34.38	44.0
KRH55846	Soybean	nucleus	36.11	43.51
KRH25675	Soybean	nucleus	35.59	42.8
Bra032913.1-P	Field mustard	mitochondrion, plastid	40.97	41.55
Bra016879.1-P	Field mustard	nucleus	34.72	41.32
CDY64518	Canola	nucleus	33.51	41.15
CDY14829	Canola	nucleus	34.55	40.95
CDX79871	Canola	nucleus	33.51	40.8
CDY47967	Canola	nucleus	33.85	40.29
Bra004691.1-P	Field mustard	nucleus	33.51	40.12
GSMUA_Achr6P22210_001	Banana	nucleus	37.15	39.85

Protein Annotations

EnsemblPlants:TraesCS3B01G326500.4

EnsemblPlantsGene:TraesCS3B01G326500

PANTHER:PTHR33873

PANTHER:PTHR33873:SF3

SEG:seg

MapMan:15.5.36

Description

No Description!

Coordinates

chr3B:-:527237202..527241896

Molecular Weight (calculated)

64566.2 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.825

Length

576 amino acids

Sequence
(BLAST)

001: KGRRRERPST PRRRSIGAAE RTARASAMRK GPSRSGSARH QQFRARAKTR VDDLQDMFSG LQYARKEARS TDAVLLEAQL HQMLREWRAE LSVPSPASSL
101: QNNNRDPSDP PSETPRPPQL APAEEEDDAT SKLVEQKPRP SANQAHKHAQ GDHDMKPEPH EEAIADPVTV AQQPTSLGPG VVATGGEVLT PATAVFHDQM
201: YYVNQELSVE DFLYDDDYKI NLPGSNPEIL NNLEGIGHQE YLQFNLPQEL PPNAYLDMNN YGQNAGDGFL HMSDLLTTMS PAPASFLRPK CALWDCPRPA
301: QGSERWQDYC SMYHAELAVK EEGPPGTMPV IRPRGIDLKD GPLFAALSAK IQGKHVGVPV CEGAATTKSP WNAPELFDLY IFEGESMREW LFFDKPRRAF
401: DSGNRKQRSL PDYNGRGWHE SRKQVMKDFG GLKRSYYMDP QPSSSYEWHL YEYEINDRDA FALYRLEFKS SEAKKSAKSK FTCSPLIEIQ QQMVRLSADG
501: PVENKRTARA RTQDVSTNVY PVQNNTAQAN APDAYQAASQ ADQMTFLNGS VVYGPHLPYG YSTEGGDFYW NSNDGA

Best Arabidopsis Sequence Match ( AT1G28520.5 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.