Factsheet for GSMUA_Achr4P15020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P08340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	GSMUA_Achr3P08340_001	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022145_P001	Maize	cytosol	10.79	63.81
VIT_10s0003g00500.t01	Wine grape	nucleus	47.67	61.03
KRH20362	Soybean	cytosol, nucleus, plastid	46.38	60.25
GSMUA_Achr1P27380_001	Banana	cytosol	27.21	59.93
KRH50133	Soybean	cytosol, nucleus, plastid	45.89	59.75
KRH30880	Soybean	cytosol	44.12	59.7
Bra010864.1-P	Field mustard	nucleus	43.64	59.17
CDX90157	Canola	nucleus	43.32	58.86
KRH32695	Soybean	cytosol	43.96	58.71
CDY35753	Canola	nucleus	43.0	58.3
CDY34095	Canola	nucleus	44.28	57.89
CDY30817	Canola	nucleus	44.44	57.14
AT1G28520.2	Thale cress	nucleus	44.12	56.38
PGSC0003DMT400058735	Potato	cytosol	29.79	55.89
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	46.86	55.01
GSMUA_Achr7P10980_001	Banana	mitochondrion, nucleus	44.28	54.24
Solyc10g008880.2.1	Tomato	cytosol, mitochondrion	41.55	54.09
Os01t0753000-01	Rice	cytosol	45.89	53.37
PGSC0003DMT400081241	Potato	cytosol	40.1	53.32
Solyc02g077450.2.1	Tomato	cytosol, mitochondrion, nucleus	39.94	53.1
Zm00001d041158_P001	Maize	cytosol	26.25	52.75
GSMUA_Achr6P22210_001	Banana	nucleus	44.44	51.4
Zm00001d043500_P006	Maize	mitochondrion	45.25	51.18
TraesCS3D01G291600.1	Wheat	mitochondrion	44.44	50.64
Bra032913.1-P	Field mustard	mitochondrion, plastid	44.44	48.59
KRH55846	Soybean	nucleus	37.36	48.54
KRH25675	Soybean	nucleus	37.36	48.43
TraesCS3B01G326500.4	Wheat	mitochondrion	44.77	48.26
Zm00001d045641_P001	Maize	cytosol	29.95	48.06
TraesCS1A01G335900.1	Wheat	nucleus	41.06	46.88
TraesCS1D01G338300.2	Wheat	nucleus	43.96	46.83
HORVU1Hr1G076620.2	Barley	nucleus	43.96	46.43
TraesCS1B01G349200.1	Wheat	nucleus	43.32	45.9
CDY64518	Canola	nucleus	34.62	45.84
CDX79871	Canola	nucleus	34.46	45.24
AT2G42400.1	Thale cress	nucleus	32.69	45.11
KXG33380	Sorghum	mitochondrion	46.38	45.0
EES18506	Sorghum	nucleus, plastid	43.64	44.5
Bra004691.1-P	Field mustard	nucleus	34.46	44.49
Bra016879.1-P	Field mustard	nucleus	34.3	44.01
Zm00001d038704_P002	Maize	plastid	42.35	43.54
Zm00001d012734_P002	Maize	cytosol	45.73	43.49
CDY47967	Canola	nucleus	33.66	43.18
Os05t0515700-01	Rice	nucleus	44.28	42.9
TraesCS3A01G291900.1	Wheat	nucleus	44.12	42.88
HORVU3Hr1G023830.1	Barley	cytosol, plastid	4.35	42.86
CDY14829	Canola	nucleus	33.33	42.59
HORVU3Hr1G072260.1	Barley	plastid	44.12	41.7
HORVU5Hr1G058480.1	Barley	cytosol, mitochondrion, nucleus	5.48	41.46
GSMUA_Achr10P...	Banana	plasma membrane	48.47	39.19
HORVU4Hr1G057240.1	Barley	cytosol, mitochondrion, nucleus, plastid	4.99	38.75
HORVU7Hr1G111470.1	Barley	nucleus	4.83	37.97
HORVU2Hr1G042110.1	Barley	cytosol, mitochondrion, nucleus	6.28	35.78
HORVU6Hr1G038800.6	Barley	nucleus	5.8	35.29
HORVU2Hr1G109410.1	Barley	mitochondrion	9.82	33.89
HORVU4Hr1G057220.1	Barley	nucleus	9.02	30.77
HORVU6Hr1G038750.11	Barley	nucleus	9.02	30.77

Protein Annotations

MapMan:15.5.36	ncoils:Coil	GO:GO:0000003	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0048578	EnsemblPlantsGene:GSMUA_Achr4G15020_001	EnsemblPlants:GSMUA_Achr4P15020_001	EnsemblPlants:GSMUA_Achr4T15020_001	UniProt:M0SP17	PANTHER:PTHR33873
UniParc:UPI000295AD8A	SEG:seg	:	:	:	:

Description

one zinc finger protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G15020_001]

Coordinates

chr4:-:11322268..11327759

Molecular Weight (calculated)

70417.3 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.507

Length

621 amino acids

Sequence
(BLAST)

001: MGKNCKSGSH RLFKAKAKNR VDDLQGMFND LQSARKESRI ADIAVLEEQV HQMLREWRAE LNEVSPACSL QGNVKESSDL FSETLRLLQL SEEEDDATSK
101: PAELALRSTP KPEELDVSKP GVGSMSNGDL KGKEAVIALD QYQDVTNLHE NVMTFIVFQR SIRCREVFSK NLRRSLLEIV MKLNFASNQR IRNDFKFYLP
201: FWFMSEIGPP LSASWIYCNS GGRSIMIRAI QIMFPIPCET MSICLFFQDY YVNQEISGHE FPQVYQYESN LPIGPHDVVL NCLEGTTYLD YQLYNLQQEM
301: ADHLYDNISV EHDGADVFPH MSDLLPTICP PPSAFLRPKC ALWDCPRPAQ GSEWCQDYCS SFHANLAVSE GPPGMTPVLR PGGIDLKDGP LFAALNARTE
401: GKNVGIPVCE GAATAKSPWN APELFDLSVL EGESLREWLF FDKPRRAFES GNRKQRSLPD YCGRGWHESR KQILKEYGGF KRSYYMDPQP LNNFEWHMYE
501: YEINNCDAFA LYRLEFKLVD PKKGAKAKLT SNPLADFQQQ MVKLNSNKSM DNKKITKNKT KVNQDTVGNS YSTSVVANQQ ETTASVFHAS EQVDSSNKNS
601: ACGPSHQYVY SIGSFNDDYI T

Best Arabidopsis Sequence Match ( AT1G28520.5 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.