Factsheet for GSMUA_Achr6P22210_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P08340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	GSMUA_Achr3P08340_001	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P27380_001	Banana	cytosol	34.64	65.96
Zm00001d022145_P001	Maize	cytosol	12.66	64.76
KRH30880	Soybean	cytosol	40.78	47.71
KRH32695	Soybean	cytosol	41.15	47.53
KRH20362	Soybean	cytosol, nucleus, plastid	41.71	46.86
KRH50133	Soybean	cytosol, nucleus, plastid	41.53	46.75
VIT_10s0003g00500.t01	Wine grape	nucleus	42.09	46.6
CDX90157	Canola	nucleus	39.29	46.17
Bra010864.1-P	Field mustard	nucleus	39.29	46.07
CDY35753	Canola	nucleus	38.92	45.63
CDY34095	Canola	nucleus	39.85	45.05
CDY30817	Canola	nucleus	40.41	44.93
HORVU3Hr1G023830.1	Barley	cytosol, plastid	5.21	44.44
GSMUA_Achr4P15020_001	Banana	nucleus	51.4	44.44
AT1G28520.2	Thale cress	nucleus	39.66	43.83
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	43.02	43.67
HORVU5Hr1G058480.1	Barley	cytosol, mitochondrion, nucleus	6.52	42.68
PGSC0003DMT400081241	Potato	cytosol	37.06	42.61
GSMUA_Achr7P10980_001	Banana	mitochondrion, nucleus	40.04	42.41
Solyc02g077450.2.1	Tomato	cytosol, mitochondrion, nucleus	36.31	41.76
Solyc10g008880.2.1	Tomato	cytosol, mitochondrion	37.06	41.72
HORVU4Hr1G057240.1	Barley	cytosol, mitochondrion, nucleus, plastid	5.96	40.0
Os01t0753000-01	Rice	cytosol	39.66	39.89
TraesCS3D01G291600.1	Wheat	mitochondrion	39.85	39.27
HORVU7Hr1G111470.1	Barley	nucleus	5.77	39.24
PGSC0003DMT400058735	Potato	cytosol	23.65	38.37
Zm00001d043500_P006	Maize	mitochondrion	39.11	38.25
Bra032913.1-P	Field mustard	mitochondrion, plastid	40.04	37.85
TraesCS3B01G326500.4	Wheat	mitochondrion	39.85	37.15
HORVU2Hr1G042110.1	Barley	cytosol, mitochondrion, nucleus	7.45	36.7
AT2G42400.1	Thale cress	nucleus	30.73	36.67
HORVU1Hr1G076620.2	Barley	nucleus	40.04	36.56
TraesCS1A01G335900.1	Wheat	nucleus	36.69	36.21
TraesCS1D01G338300.2	Wheat	nucleus	39.29	36.19
TraesCS1B01G349200.1	Wheat	nucleus	39.48	36.18
KRH55846	Soybean	nucleus	32.03	35.98
KRH25675	Soybean	nucleus	32.03	35.91
HORVU6Hr1G038800.6	Barley	nucleus	6.7	35.29
EES18506	Sorghum	nucleus, plastid	39.85	35.14
Zm00001d038704_P002	Maize	plastid	38.92	34.6
Os05t0515700-01	Rice	nucleus	40.78	34.17
Bra016879.1-P	Field mustard	nucleus	30.73	34.09
CDY14829	Canola	nucleus	30.73	33.95
CDY47967	Canola	nucleus	30.54	33.88
CDX79871	Canola	nucleus	29.8	33.83
KXG33380	Sorghum	mitochondrion	40.22	33.75
CDY64518	Canola	nucleus	29.24	33.48
Bra004691.1-P	Field mustard	nucleus	29.8	33.26
TraesCS3A01G291900.1	Wheat	nucleus	39.11	32.86
Zm00001d012734_P002	Maize	cytosol	39.11	32.16
HORVU3Hr1G072260.1	Barley	plastid	39.29	32.12
Zm00001d041158_P001	Maize	cytosol	18.44	32.04
Zm00001d045641_P001	Maize	cytosol	22.91	31.78
HORVU2Hr1G109410.1	Barley	mitochondrion	10.61	31.67
HORVU6Hr1G038750.11	Barley	nucleus	10.61	31.32
HORVU4Hr1G057220.1	Barley	nucleus	10.43	30.77
GSMUA_Achr10P...	Banana	plasma membrane	41.71	29.17

Protein Annotations

MapMan:15.5.36	ncoils:Coil	GO:GO:0000003	GO:GO:0005575	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0048578	EnsemblPlantsGene:GSMUA_Achr6G22210_001	EnsemblPlants:GSMUA_Achr6P22210_001
EnsemblPlants:GSMUA_Achr6T22210_001	UniProt:M0T969	PANTHER:PTHR33873	PANTHER:PTHR33873:SF1	TMHMM:TMhelix	UniParc:UPI000294F1C3

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G22210_001]

Coordinates

chr6:-:19073886..19079598

Molecular Weight (calculated)

61572.8 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.381

Length

537 amino acids

Sequence
(BLAST)

001: MGKGSKSVSH QLFKDKARNR VDDLQEMFTD LQSALKESRA ADVAVLEEQV HQMLREWRAE LNQASPATSL QSWLILGGQA NTPDTSDLFS ETLRLLQLSE
101: EEDDATSKLA DLAFRNTPKP EQVEFQQADV GATQGREAAT FYQEQHQFSN CFILMLDERI FMSFLSHLLT HHFSSYLGGV LFGVVVSILG PISILTFNIV
201: HSNIYLHRKA KKGKMTTHFA NLNFMDCGYW HLIFMLFLFY CSYMQWSERC LYDLYSKTEE SEERLCVCVY FPPWVLIIME IESSGFSVVR FFYFEQFYHM
301: NQEVAEQEFL YADHYESNHP NGAHDAAVTC LEGPYHFDYQ QYNMHQELSH DLYINPTEQN TQDVFPHISD VLPAICPPPS AFLRPKCALW DCPRPAQGSE
401: WCQDYCSSFH ATLAINEGPP GMTPVLRPGG INLKDGPLFA ALSAKVQGKN VGIPVCEGAA TSKSPWNAPD LFDLCVLEGE SLREWLFFDK PRRAFESGNR
501: KQRSLPDYNG RGWHESRKQA RIQTRRFKEK CQSQVDQ

Best Arabidopsis Sequence Match ( AT1G28520.5 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.