CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59383	Soybean	nucleus	96.57	96.57
Bra031881.1-P	Field mustard	cytosol	54.2	67.96
CDY33984	Canola	nucleus	54.55	67.23
PGSC0003DMT400053156	Potato	mitochondrion	52.49	65.95
VIT_00s0556g00010.t01	Wine grape	golgi, vacuole	50.09	65.62
AT5G65090.1	Thale cress	nucleus	58.32	64.27
VIT_00s0357g00110.t01	Wine grape	golgi	50.77	63.52
CDY14538	Canola	nucleus	61.58	61.9
CDY31285	Canola	nucleus	58.15	61.41
CDY08822	Canola	nucleus	60.89	61.31
GSMUA_Achr9P12980_001	Banana	nucleus	53.0	61.31
Bra024353.1-P	Field mustard	nucleus	61.06	60.14
GSMUA_Achr7P17700_001	Banana	nucleus	51.46	59.06
Solyc04g054830.2.1	Tomato	nucleus	56.26	58.78
GSMUA_Achr5P16700_001	Banana	cytosol	40.65	56.43
Os02t0751900-01	Rice	plasma membrane	54.2	55.83
KXG19625	Sorghum	nucleus	46.66	53.23
TraesCS6A01G302300.1	Wheat	nucleus, plastid	54.03	52.76
TraesCS6D01G281800.1	Wheat	nucleus, plastid	54.37	52.75
TraesCS7D01G183100.1	Wheat	nucleus, plastid	47.0	52.69
TraesCS6B01G331500.1	Wheat	nucleus, plastid	54.2	52.67
Zm00001d044859_P001	Maize	nucleus	46.83	52.5
KRH20549	Soybean	nucleus	45.28	52.07
TraesCS7B01G086400.2	Wheat	nucleus, plastid	46.66	51.91
Os06t0222900-01	Rice	nucleus	47.34	51.78
KRH13212	Soybean	nucleus	44.77	51.68
HORVU6Hr1G075060.26	Barley	nucleus	53.86	51.56
Zm00001d052232_P002	Maize	nucleus	46.83	51.41
KXG30738	Sorghum	nucleus	50.6	51.04
Zm00001d018078_P002	Maize	nucleus	50.26	50.6
Zm00001d052401_P001	Maize	cytosol, nucleus, plastid	39.11	48.72
TraesCS7A01G181500.1	Wheat	nucleus, plastid	41.17	48.48
KXG27642	Sorghum	plastid	46.66	47.97
KRH32792	Soybean	cytosol	21.61	47.55
TraesCS4D01G123400.1	Wheat	plastid	45.28	47.14
TraesCS4A01G189600.1	Wheat	plastid	44.94	46.79
HORVU4Hr1G023500.2	Barley	nucleus, plastid	44.6	46.68
TraesCS4B01G129000.1	Wheat	nucleus, plastid	45.11	45.74
KRH19738	Soybean	nucleus	35.85	44.75
KRH32331	Soybean	mitochondrion	35.33	44.49
KRG95832	Soybean	nucleus	35.51	44.04
KRH67243	Soybean	nucleus	41.85	43.81
KRH37570	Soybean	cytosol	8.4	43.75
KRH67562	Soybean	nucleus	36.88	43.61
KRG95566	Soybean	nucleus	41.68	43.47
KRG89576	Soybean	cytosol	8.23	42.86
KRH32041	Soybean	nucleus	40.99	42.75
KRH48717	Soybean	cytosol	28.64	42.39
KRH71395	Soybean	nucleus	40.48	42.14
KRH58596	Soybean	mitochondrion	30.53	40.92
KRH42503	Soybean	cytosol	31.05	40.86
KRH77819	Soybean	nucleus	40.31	40.59
KRG91335	Soybean	nucleus	39.97	40.31
KRH27671	Soybean	nucleus	39.97	40.24
KRH35494	Soybean	nucleus	40.31	40.03
KRH66073	Soybean	plastid	30.7	39.78
KRH40911	Soybean	cytosol	30.7	39.6
KRG89097	Soybean	cytosol	30.36	39.16
KRH18550	Soybean	cytosol	28.82	36.29
KRG93446	Soybean	cytosol	28.99	36.19
KRH16316	Soybean	cytosol	7.2	35.0
KRH77232	Soybean	cytosol	31.05	31.64
KRH35060	Soybean	cytosol, mitochondrion, nucleus, plastid	32.59	30.11
KRH57586	Soybean	nucleus	31.9	29.81
KRG91711	Soybean	cytosol, mitochondrion, nucleus, plastid	32.25	29.79
KRH08618	Soybean	cytosol, golgi, mitochondrion, plastid	32.25	29.33
KRH70253	Soybean	cytosol, endoplasmic reticulum, mitochondrion, plastid	32.08	29.26
KRH04304	Soybean	cytosol, mitochondrion, nucleus	31.22	28.93
KRH28263	Soybean	cytosol	31.22	28.89
KRH04678	Soybean	cytosol	12.52	21.41

Protein Annotations

EntrezGene:100790328	MapMan:27.5.4.1	Gene3D:3.60.10.10	EMBL:ACUP02004851	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
EnsemblPlantsGene:GLYMA_08G138000	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0046856	InterPro:IPPc	InterPro:IPR036691	UniProt:K7L6K1
EnsemblPlants:KRH43218	ProteinID:KRH43218	ProteinID:KRH43218.1	PFAM:PF03372	PANTHER:PTHR11200	PANTHER:PTHR11200:SF106
SMART:SM00128	SUPFAM:SSF56219	UniParc:UPI0002338736	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:10576561..10581095

Molecular Weight (calculated)

65487.4 Da

IEP (calculated)

8.681

GRAVY (calculated)

-0.594

Length

583 amino acids

Sequence
(BLAST)

001: MSSFTGARSK ANANSEMTKA NEINLCPVNT STITSTSPDT SAKNEKKKKS ILPKIFGSKR NGRGSDEETL KTSSAEEGDG VTLDLENKIE TRRKAFLEAA
101: PIMRKSFSER ESSPGIEGLN LSNFERPMIT METELQSFRI FVATWNVGGK SPSYDLNLQD FLLVEGSADI YVLGFQEIVP LSAGNVLVIE DNEPAAKWLA
201: LISQALNKPR NEYSDSSDSG TGSKTQSSSK ESKSPASLNF FQKPSLKVIS KNFRAEGSSL LKACNCPVES PSRERRRMRK FSDPMSKLDP ELRGDDTVEE
301: LLSIAEIPSS ASQSRYSLIS TKQMVGIFLT IWTKKELVPH IGHLRADSVG RGIMGCLGNK GCISISMSLH QTSFCFVCSH LASGEKEGDE LKRNSDVAEI
401: LKGTQFPRIC KNPCRRAPEK IVDHDRIIWL GDLNYRVALS YEETRVLLED NDWDTLLAKD QLNMERDAGR VFNGFKEGRV VFAPTYKYSH NSDSYAGETV
501: KSKKKRRTPA WCDRILWRGN GIEQLSYIRG ESRFSDHRPV CAVFSVDVEV RSRNNRFRKG YSYTSPRPEY EDFIPQRHSF YDY

Best Arabidopsis Sequence Match ( AT5G65090.1 )
(BLAST)

001: MNNRGNNDDL DHHYGVFNDF ERRMTSRKKS VLDNTSPMIW KTVSERKSSP GIEGLNLSSF DRPMAPTTEI RELRVFLATW NVGGRTPNND LNLEDFLLVE
101: GTADLYICGF QEIVPLSAGN VLVVEDNEPA AKWLALISQA LNKPKQESVY SNAAYSASRT TTCSSSSCGS EESRAPSSLS FFQRPNLKVL SRNYRVDSSL
201: LKTCNCPVID TSVGWEARRS KRFSDPSTDS SNNVEPENFR VHENFLFDDV PATTKMPGQM SYRLIASKQM VGLFLSVWAR RELIPHISHL RLDSVGRGIM
301: GRLGNKGCIA ISMSLHQTSF CFVCSHLASG EKEGDELRRN ADVAEILKHT QFPKLTKNPN CHAPERIIDH DRVLWLGDLN YRVALTYEET RVLLEDNDWD
401: TLLERDQLNM ERGAGRVFSG FQEGQIFFAP TYKYSQNSDA YAGEMTKSKK KRRTPAWCDR ILWKGEGIEQ LSYIRGESRF SDHRPVCAIF AVEVDVKSLN
501: KGRFRKGYSC AAVRLVEDVA IPQRHSFYD

Arabidopsis Description

IP5P5Type I inositol polyphosphate 5-phosphatase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q66GQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.