Factsheet for PGSC0003DMT400053156

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054830.2.1	Tomato	nucleus	96.55	80.29
Bra031881.1-P	Field mustard	cytosol	60.99	60.86
CDY33984	Canola	nucleus	60.99	59.83
VIT_00s0556g00010.t01	Wine grape	golgi, vacuole	55.39	57.75
AT5G65090.1	Thale cress	nucleus	63.15	55.39
VIT_00s0357g00110.t01	Wine grape	golgi	55.6	55.36
GSMUA_Achr7P17700_001	Banana	nucleus	58.41	53.35
KXG19625	Sorghum	nucleus	58.19	52.84
GSMUA_Achr9P12980_001	Banana	nucleus	57.33	52.78
KRH59383	Soybean	nucleus	66.16	52.66
KRH43218	Soybean	nucleus	65.95	52.49
Os06t0222900-01	Rice	nucleus	59.7	51.97
Zm00001d052232_P002	Maize	nucleus	59.05	51.6
CDY31285	Canola	nucleus	61.21	51.45
TraesCS7D01G183100.1	Wheat	nucleus, plastid	57.11	50.96
Zm00001d044859_P001	Maize	nucleus	56.9	50.77
Os02t0751900-01	Rice	plasma membrane	61.85	50.71
TraesCS7B01G086400.2	Wheat	nucleus, plastid	57.11	50.57
CDY14538	Canola	nucleus	63.15	50.52
CDY08822	Canola	nucleus	62.93	50.43
Bra024353.1-P	Field mustard	nucleus	63.15	49.49
TraesCS6A01G302300.1	Wheat	nucleus, plastid	63.15	49.08
TraesCS6D01G281800.1	Wheat	nucleus, plastid	63.15	48.75
TraesCS6B01G331500.1	Wheat	nucleus, plastid	62.93	48.67
KXG30738	Sorghum	nucleus	60.13	48.27
HORVU6Hr1G075060.26	Barley	nucleus	63.15	48.11
PGSC0003DMT400069298	Potato	cytosol	33.62	47.71
GSMUA_Achr5P16700_001	Banana	cytosol	43.1	47.62
Zm00001d018078_P002	Maize	nucleus	59.27	47.5
PGSC0003DMT400058661	Potato	plastid	26.08	47.45
TraesCS7A01G181500.1	Wheat	nucleus, plastid	50.0	46.87
Zm00001d052401_P001	Maize	cytosol, nucleus, plastid	45.26	44.87
TraesCS4D01G123400.1	Wheat	plastid	51.72	42.86
TraesCS4A01G189600.1	Wheat	plastid	51.51	42.68
HORVU4Hr1G023500.2	Barley	nucleus, plastid	50.86	42.37
KXG27642	Sorghum	plastid	50.65	41.45
TraesCS4B01G129000.1	Wheat	nucleus, plastid	51.08	41.22
PGSC0003DMT400061482	Potato	nucleus	40.73	40.65
PGSC0003DMT400049726	Potato	nucleus	45.04	37.32
PGSC0003DMT400003548	Potato	nucleus	34.91	36.08
PGSC0003DMT400042059	Potato	nucleus	44.18	34.4
PGSC0003DMT400082071	Potato	nucleus	46.12	34.29
PGSC0003DMT400062236	Potato	mitochondrion	37.28	27.46
PGSC0003DMT400052816	Potato	mitochondrion	35.78	26.82
PGSC0003DMT400064482	Potato	cytosol, mitochondrion, nucleus, plastid	38.15	26.54

Protein Annotations

EntrezGene:102592939	MapMan:27.5.4.1	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653
GO:GO:0009932	GO:GO:0009987	GO:GO:0010053	GO:GO:0016043	GO:GO:0016049	GO:GO:0016787
GO:GO:0030154	GO:GO:0040007	GO:GO:0046856	GO:GO:0048765	GO:GO:0048766	InterPro:IPPc
InterPro:IPR036691	UniProt:M1BUH9	PFAM:PF03372	EnsemblPlantsGene:PGSC0003DMG400020628	PGSC:PGSC0003DMG400020628	EnsemblPlants:PGSC0003DMT400053156
PANTHER:PTHR11200	PANTHER:PTHR11200:SF106	SMART:SM00128	SUPFAM:SSF56219	UniParc:UPI000295A103	RefSeq:XP_006355368.1
SEG:seg	:	:	:	:	:

Description

Bristled [Source:PGSC_GENE;Acc:PGSC0003DMG400020628]

Coordinates

chr4:-:51670607..51673950

Molecular Weight (calculated)

52602.4 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.439

Length

464 amino acids

Sequence
(BLAST)

001: MILISYLLSA RHNSARIEGL NLSNFDQSTQ PATMIKNIRV FAGTWNVGGK TPNHGLNLED FLQVEGSADI YVLGFQEIVP LNAGNVLVSE DSEPAARWLA
101: LISHALNKSS YNHDDSSSSK SNSLFNKHSL KVVKKSLKAN SNLLKTCNCP STTRRLRKLS DPSCSLLTHF REDDLQSIAQ KFPCTNYGLS YHLISSKQMV
201: GIFLSVWARK ELAQHIGHLR ISSLGRGIMG CLGNKGCIAI SMSLYRTSFC FVCSHLASGE KEGDELRRNA DVAEILKSIQ FSRICRNPDR GIAEKITDHQ
301: RAIWLGDLNY RVSLSYEETR LLLEDNDWDS LLEKDQLNVE RESGRVFSGW KEGKILFAPT YKYSHNSDSY AGETTKSKKK RRTPAWCDRI LWRGDGIEQL
401: SYIRGESRFS DHRPVCSVFA VDVEVEAELV KKNNSKFRKG FSCIANRMDH YDDFIPQRHS FYDY

Best Arabidopsis Sequence Match ( AT5G65090.1 )
(BLAST)

001: MNNRGNNDDL DHHYGVFNDF ERRMTSRKKS VLDNTSPMIW KTVSERKSSP GIEGLNLSSF DRPMAPTTEI RELRVFLATW NVGGRTPNND LNLEDFLLVE
101: GTADLYICGF QEIVPLSAGN VLVVEDNEPA AKWLALISQA LNKPKQESVY SNAAYSASRT TTCSSSSCGS EESRAPSSLS FFQRPNLKVL SRNYRVDSSL
201: LKTCNCPVID TSVGWEARRS KRFSDPSTDS SNNVEPENFR VHENFLFDDV PATTKMPGQM SYRLIASKQM VGLFLSVWAR RELIPHISHL RLDSVGRGIM
301: GRLGNKGCIA ISMSLHQTSF CFVCSHLASG EKEGDELRRN ADVAEILKHT QFPKLTKNPN CHAPERIIDH DRVLWLGDLN YRVALTYEET RVLLEDNDWD
401: TLLERDQLNM ERGAGRVFSG FQEGQIFFAP TYKYSQNSDA YAGEMTKSKK KRRTPAWCDR ILWKGEGIEQ LSYIRGESRF SDHRPVCAIF AVEVDVKSLN
501: KGRFRKGYSC AAVRLVEDVA IPQRHSFYD

Arabidopsis Description

IP5P5Type I inositol polyphosphate 5-phosphatase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q66GQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.