CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047558_P001	Maize	nucleus	90.04	90.63
Os03t0326300-01	Rice	nucleus	77.27	80.22
HORVU6Hr1G075350.1	Barley	nucleus	77.27	77.27
TraesCS6D01G284300.1	Wheat	nucleus	77.06	77.22
TraesCS6B01G333400.1	Wheat	nucleus	76.62	76.79
TraesCS6A01G305100.2	Wheat	nucleus	75.97	75.97
Zm00001d028989_P002	Maize	endoplasmic reticulum, plasma membrane	58.23	58.48
VIT_08s0007g07610.t01	Wine grape	nucleus	32.03	40.66
GSMUA_Achr5P27760_001	Banana	nucleus	39.39	28.89
KXG38574	Sorghum	plastid	22.94	24.88
EES00516	Sorghum	cytosol	17.1	18.2
OQU86641	Sorghum	nucleus	14.72	15.89

Protein Annotations

EnsemblPlants:EER92330	EnsemblPlantsGene:SORBI_3001G386300	EntrezGene:8084564	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF9	PFscan:PS50089	ProteinID:EER92330
ProteinID:EER92330.1	RefSeq:XP_002465332.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	unigene:Sbi.3690
UniParc:UPI0001A82AAB	UniProt:C5X1Q5	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:67372911..67377613

Molecular Weight (calculated)

50977.9 Da

IEP (calculated)

9.686

GRAVY (calculated)

-0.820

Length

462 amino acids

Sequence
(BLAST)

001: MDPTEPRWRI NSSFSPPTSR RWDCRYSSDG LPHRVHDAPH DHPPYVSSLS SHSKGSRSAF GSDQYLNHHH SVSDGALSYF GSPADSLQAP RWTPSLQRFD
101: LGEFSTPAGG SRPETSDYPQ SSERPLTATS SFSSASPFSE SSQLASSSSK QPAPYLPRNH MGRRSFMSKP VYPLVFRNPV SESEACRMLE VTNAGRATPS
201: DDSQASPLWR RSLASPELKF HNALNELGKM EASPEPNTSS RREGFRWSNA SSYDFGYDGD AIDISDHISI ESQRSPTSSV RFLKCGLCER FLRQKSPWTS
301: NRIVRNADMP VAAVLPCRHA FHADCLEEST PKTEVHDPPC PLCTRATEDE GHVSFSEPLH VALRSARSRN LSLGSGAGGS SSSANPPCSD RGLKRNHSAI
401: VPRRGSGSSL FRNRFKKQFP FKARIGKELF GGRVFNRVGS SSSSGQQGDH RQQAPKHDRP MK

Best Arabidopsis Sequence Match ( AT1G14180.1 )
(BLAST)

001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW

Arabidopsis Description

Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.