CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053702_P008	Maize	cytosol	92.27	91.59
Zm00001d015665_P007	Maize	cytosol, plastid	93.92	87.33
TraesCS6A01G170400.1	Wheat	cytosol	82.32	83.24
TraesCS6B01G198600.1	Wheat	cytosol	82.14	83.21
TraesCS6D01G160100.1	Wheat	cytosol	82.14	83.21
Os02t0191700-00	Rice	plasma membrane	84.35	82.97
HORVU6Hr1G034840.3	Barley	cytosol	81.95	82.87
EER94083	Sorghum	cytosol	65.56	65.8
EES17718	Sorghum	nucleus, plastid	17.68	19.59

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	MapMan:18.4.24.1.2.4	EntrezGene:8079450	UniProt:C5XX35
EnsemblPlants:EES06429	ProteinID:EES06429	ProteinID:EES06429.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	ProteinID:KXG29677.2	PFAM:PF13499
ScanProsite:PS00018	PANTHER:PTHR14095	PANTHER:PTHR14095:SF7	EnsemblPlantsGene:SORBI_3004G074900	SUPFAM:SSF47473	unigene:Sbi.20404
UniParc:UPI0001A85BFF	RefSeq:XP_002453453.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6053739..6058959

Molecular Weight (calculated)

62039.1 Da

IEP (calculated)

5.411

GRAVY (calculated)

-0.310

Length

543 amino acids

Sequence
(BLAST)

001: MVEAPAPADL SAAAQVPALP LQVDLLQLPP EVPAPGAPAL RGVLDRLFAH WLSLPDTAAL LASLVHKAKA SGGGGAAAAM LPSMMLQGGA AVPPLSPRSP
101: RLSRRPSSLG AGQPNRSASP LRPPAARPAK EVIPQFYFQD GRPPPYEVKK QCISTVDQLF AGHSNGLRAP EFRMVTRELC KLPTFFTTVI FDKIDKESTG
201: FVTRDAFIDF WVNSNLMSMD SATQVFTILK QQNRNYLTKE DFKPILKDLL DNHPGLEFLK STPEFQERYA ETVVYRIFYS LNRIGSGHLT LRELKRGNLL
301: NALRHADDEE DINKVLRYFS YEHFYVIYCK FWELDTDHDF FIDKENLIKY GNHALTYRIV DRIFSEVPRK FTSKVEGKMG YEDFVHFILS EEDKSSAPSQ
401: EYWFKCIDLD GNGILTHIEL QFFFEEQLHR MECMAQEPVL FEDILCQLID MIGPENDKYL TLKDFRRCKL SGHFFNILFN LNKFMAFEAR DPFLIRQMRE
501: EPSLTDWDRF ARREYVRLAM EEDGEDASNA SGDVWDESLE SPF

Best Arabidopsis Sequence Match ( AT5G28850.2 )
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTSKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDDS SLEAPF

Arabidopsis Description

B''BETASerine/threonine protein phosphatase 2A regulatory subunit B''beta [Source:UniProtKB/Swiss-Prot;Acc:Q5QIT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.