Factsheet for GSMUA_Achr4P05400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02370_001
GSMUA_Achr1P10450_001
GSMUA_Achr4P25770_001
GSMUA_Achr6P03790_001
GSMUA_Achr7P08700_001
GSMUA_Achr9P13880_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	GSMUA_Achr1P10450_001	AT3G21150.1	21798944
AT4G27780.1	GSMUA_Achr6P03790_001	AT3G21150.1	21798944
AT4G27780.1	GSMUA_Achr7P08700_001	AT3G21150.1	21798944
AT4G27780.1	GSMUA_Achr9P13880_001	AT3G21150.1	21798944
AT4G27780.1	GSMUA_AchrUn_...	AT3G21150.1	21798944
AT4G27780.1	GSMUA_Achr1P02370_001	AT4G38580.1	18823312
AT4G27780.1	GSMUA_Achr4P25770_001	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	74.28	60.65
AT5G53470.1	Thale cress	endoplasmic reticulum	61.59	50.3
KRH64393	Soybean	endoplasmic reticulum	62.32	49.71
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	62.68	49.29
CDY62840	Canola	endoplasmic reticulum	60.14	48.97
KRH53542	Soybean	endoplasmic reticulum	62.32	48.59
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	55.8	47.83
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	55.43	47.52
Bra022656.1-P	Field mustard	endoplasmic reticulum	58.7	47.51
CDY19024	Canola	endoplasmic reticulum	58.33	47.49
CDY49168	Canola	endoplasmic reticulum	58.7	47.37
Zm00001d001798_P002	Maize	plastid	56.16	47.26
Zm00001d026639_P002	Maize	plasma membrane	55.8	46.95
AT4G27780.1	Thale cress	endoplasmic reticulum	60.14	46.89
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	53.99	46.56
EES13117	Sorghum	endoplasmic reticulum	55.8	46.11
KXG37573	Sorghum	cytosol	23.55	46.1
CDX89227	Canola	endoplasmic reticulum	58.33	45.74
PGSC0003DMT400047661	Potato	endoplasmic reticulum	57.25	45.4
Solyc03g082910.2.1	Tomato	nucleus	56.88	45.38
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	38.41	44.92
CDY29860	Canola	endoplasmic reticulum	40.22	44.05
CDX92839	Canola	endoplasmic reticulum	26.45	43.71
Bra019027.1-P	Field mustard	endoplasmic reticulum	39.86	43.65
Bra026307.1-P	Field mustard	endoplasmic reticulum	57.25	43.41
GSMUA_Achr4P19960_001	Banana	endoplasmic reticulum	25.0	16.75
GSMUA_AchrUn_...	Banana	golgi, nucleus, peroxisome	21.74	14.78

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	Gene3D:1.25.40.960	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G05400_001	EnsemblPlants:GSMUA_Achr4P05400_001	EnsemblPlants:GSMUA_Achr4T05400_001	InterPro:IPR000582
InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0SLA7	PFAM:PF00887
PFAM:PF13857	PRINTS:PR00689	PRINTS:PR01415	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228
PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	UniParc:UPI000295B257
SEG:seg	:	:	:	:	:

Description

Acyl-CoA-binding domain-containing protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G05400_001]

Coordinates

chr4:-:4175827..4182743

Molecular Weight (calculated)

30182.3 Da

IEP (calculated)

4.524

GRAVY (calculated)

-0.378

Length

276 amino acids

Sequence
(BLAST)

001: MLSKLIPPTK NTAKSRSLLD DDSDWEGIES TELDETFSAA TAFVAATAAD KNSAKVSNDV QLLLYGLYKI ATEGPCTVPQ PSALKMTARA KWNAWQRLGT
101: MPPEEAMQMY IMIISDLYPS WADGSTKANT LPSSSTAKGT MGPVFSSFVH EEESETDSKL EPIHGFARDG EADALLALIA NGALVNSRDS EGRTPLHWAV
201: DRGHFRVVEI LLNKDADVNA KENDGQTPLH YAVLCEREEI AELLIEHHAD QHIKDSDGSS PLDLCGSRWD FMATSK

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.