Factsheet for VIT_18s0001g09340.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g03110.t01	Wine grape	endoplasmic reticulum, extracellular	18.21	41.61
CDY03471	Canola	vacuole	30.67	25.88
Bra013778.1-P	Field mustard	endoplasmic reticulum, vacuole	30.67	25.53
CDY34268	Canola	endoplasmic reticulum, vacuole	30.67	25.2
Bra019240.1-P	Field mustard	endoplasmic reticulum, golgi	28.75	24.86
CDY10995	Canola	endoplasmic reticulum, golgi	28.75	24.86
AT4G24230.6	Thale cress	endoplasmic reticulum	28.75	24.59
CDX92624	Canola	endoplasmic reticulum, vacuole	27.8	24.1
GSMUA_Achr4P19960_001	Banana	endoplasmic reticulum	28.11	21.36
PGSC0003DMT400055408	Potato	vacuole	29.71	20.99
VIT_07s0129g00430.t01	Wine grape	endoplasmic reticulum, vacuole	30.03	20.89
GSMUA_AchrUn_...	Banana	golgi, nucleus, peroxisome	26.52	20.44
Solyc04g078090.2.1	Tomato	endoplasmic reticulum, golgi	28.75	20.18
Zm00001d015957_P001	Maize	plastid	17.57	17.92
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	19.81	17.66
TraesCS4D01G227800.1	Wheat	endoplasmic reticulum	23.96	14.15
HORVU4Hr1G063810.1	Barley	endoplasmic reticulum	23.96	14.07
Zm00001d028397_P001	Maize	endoplasmic reticulum, plasma membrane	24.28	13.97
TraesCS4B01G227100.1	Wheat	endoplasmic reticulum, plasma membrane	23.32	13.72
Os03t0243600-01	Rice	endoplasmic reticulum	24.28	13.36
TraesCS4A01G071200.1	Wheat	endoplasmic reticulum	22.36	13.23
EER95185	Sorghum	endoplasmic reticulum	23.32	13.13

Protein Annotations

Gene3D:1.20.80.10	EntrezGene:100248941	wikigene:100248941	MapMan:35.1	EntrezGene:ACBP	wikigene:ACBP
ProteinID:ADK56449	ProteinID:ADK56449.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	ProteinID:CCB45767	ProteinID:CCB45767.1
UniProt:F6GZN5	InterPro:FERM/acyl-CoA-bd_prot_sf	EMBL:FN595227	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488
EMBL:HM483365	InterPro:IPR000582	InterPro:IPR014352	PFAM:PF00887	PRINTS:PR00689	PFscan:PS51228
PANTHER:PTHR23310	PANTHER:PTHR23310:SF96	SUPFAM:SSF47027	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000210A058
ArrayExpress:VIT_18s0001g09340	EnsemblPlantsGene:VIT_18s0001g09340	EnsemblPlants:VIT_18s0001g09340.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:7839602..7843450

Molecular Weight (calculated)

34499.2 Da

IEP (calculated)

4.253

GRAVY (calculated)

-0.432

Length

313 amino acids

Sequence
(BLAST)

001: MELAQELLFT VSLALLFSFL VAKLVSLAMA ADLKSAQNVD DHIVANEVRF VETETRVESV DGGSGLVEET CEITRGGEVP VLPSEEEVSE IVELPENSPR
101: ERSGHEILVS HDVAVVEERD ERELESEEDD WEGVERSELE RVFAAAANFV GSGNKGDGWS SDAQMELYGL HKIAVEGPCH EPQPMPLKLS ARAKWNAWQR
201: MGNMSREVAM EQYIALLSDR VPGWMEASSA GDDKPESSEG GVHDILDPNQ SSLLHDQISS TNETKPELKS GTLGIDLTEG SNSVRERMTN IALLLYLHHH
301: KGHSTLSLEQ NKD

Best Arabidopsis Sequence Match ( AT4G24230.6 )
(BLAST)

001: MEVFLEMLLT AVVALLFSFL LAKLVSVATV ENDLSSDQPL KPEIGVGVTE DVRFGMKMDA RVLESQRNFQ VVDENVELVD RFLSEEADRV YEVDEAVTGN
101: AKICGDREAE SSAAASSENY VIAEEVILVR GQDEQSDSAE AESISSVSPE NVVAEEIKSQ GQEEVTELGR SGCVENEESG GDVLVAESEE VRVEKSSNMV
201: EESDAEAENE EKTELTIEED DDWEGIERSE LEKAFAAAVN LLEESGKAEE IGAEAKMELF GLHKIATEGS CREAQPMAVM ISARAKWNAW QKLGNMSQEE
301: AMEQYLALVS KEIPGLTKAG HTVGKMSEME TSVGLPPNSG SLEDPTNLVT TGVDESSKNE IVSGER

Arabidopsis Description

ACBP3Acyl-CoA-binding domain 3 [Source:UniProtKB/TrEMBL;Acc:B3H4G6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.