Factsheet for VIT_12s0028g02190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27043	Soybean	cytosol	69.18	71.13
KRH22286	Soybean	cytosol	69.18	71.13
AT1G06330.1	Thale cress	cytosol	68.49	66.67
VIT_10s0003g01220.t01	Wine grape	cytosol	63.7	64.14
Bra032428.1-P	Field mustard	cytosol	67.81	63.46
CDY06206	Canola	cytosol	64.38	62.25
GSMUA_Achr7P13900_001	Banana	cytosol	60.27	59.86
GSMUA_Achr10P...	Banana	cytosol	57.53	59.57
GSMUA_Achr3P15460_001	Banana	cytosol	55.48	59.12
Solyc07g055010.2.1	Tomato	extracellular	57.53	55.63
GSMUA_Achr6P14470_001	Banana	cytosol	52.74	53.47
PGSC0003DMT400052612	Potato	cytosol, mitochondrion, nucleus	40.41	51.3
VIT_08s0040g00130.t01	Wine grape	cytosol	43.15	50.4
Os01t0758000-00	Rice	cytosol	47.95	45.75
TraesCS3B01G329600.1	Wheat	cytosol	45.89	45.27
Zm00001d043403_P001	Maize	cytosol	47.95	45.16
TraesCS3D01G295000.1	Wheat	cytosol	45.21	44.59
EES03638	Sorghum	cytosol	48.63	44.1
HORVU3Hr1G072940.2	Barley	cytosol	43.84	40.76
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	37.67	38.73
VIT_18s0001g04800.t01	Wine grape	cytosol, plastid	37.67	36.91
VIT_07s0031g01160.t01	Wine grape	cytosol	37.67	36.42
VIT_14s0006g01800.t01	Wine grape	cytosol	35.62	35.62
VIT_04s0023g03910.t01	Wine grape	cytosol	29.45	35.54
VIT_01s0011g04700.t01	Wine grape	cytosol	34.93	34.69
CDY09978	Canola	cytosol	66.44	33.22
VIT_16s0050g00150.t01	Wine grape	mitochondrion, plastid	35.62	30.23
VIT_03s0038g02440.t01	Wine grape	cytosol	30.82	29.03
VIT_04s0023g03890.t01	Wine grape	cytosol	30.82	28.12

Protein Annotations

EntrezGene:100266048	wikigene:100266048	Gene3D:3.30.70.100	MapMan:35.1	ProteinID:CBI21983	ProteinID:CBI21983.3
UniProt:E0CTR7	EMBL:FN595235	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	EntrezGene:LOC100266048	wikigene:LOC100266048	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF112	SUPFAM:SSF55008	UniParc:UPI0001984450	ArrayExpress:VIT_12s0028g02190	EnsemblPlantsGene:VIT_12s0028g02190	EnsemblPlants:VIT_12s0028g02190.t01
RefSeq:XP_002276680	RefSeq:XP_002276680.1	:	:	:	:

Description

No Description!

Coordinates

chr12:+:2982108..2982760

Molecular Weight (calculated)

16575.4 Da

IEP (calculated)

8.009

GRAVY (calculated)

-0.844

Length

146 amino acids

Sequence
(BLAST)

001: MTTIEMRVHM DCAGCESKIK KTLQKLKGVD SIEIDMATQK VTVTGWADQK KVLKAVRKTG RRAELWSLPY NPEHHNGTDY FNISQHHCNG PSTHFTPQPS
101: SYYNYYKHGY DSHDGSYYHR PPQSTIFGEQ TGAAFSDDNP NACSIM

Best Arabidopsis Sequence Match ( AT1G06330.1 )
(BLAST)

001: MTTIEMRVHM DCVGCESRVK NALQKMRGVD AVEIDMVQQK VTVTGYADQK KVLKKVRKTG RRAELWQLPY NPDHMGGSSS NGGYFYNPQG CNGPINHAAP
101: VPTSSYNYYK HGYDSNDYSS YRHHPVHASI FSHQTGSKFS DENPNACSIM

Arabidopsis Description

Heavy metal transport/detoxification superfamily protein [Source:TAIR;Acc:AT1G06330]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.