CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX84035
CDX88803
CDX89402
CDX89404
CDX92368
CDX94426
CDX94429
CDX96860
CDY09128
CDY35676
CDY49093
CDY49480
CDY62016
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33390.1	CDX84035	AT1G14340.1	21798944
AT2G33390.1	CDX96860	AT1G14340.1	21798944
AT2G33390.1	CDY49093	AT1G14340.1	21798944
AT2G33390.1	CDY62016	AT1G14340.1	21798944
AT2G33390.1	CDX89402	AT4G25660.1	21798944
AT2G33390.1	CDX89404	AT4G25660.1	21798944
AT2G33390.1	CDX94426	AT4G25660.1	21798944
AT2G33390.1	CDX94429	AT4G25660.1	21798944
AT2G33390.1	CDY49480	AT4G25660.1	21798944
AT2G33390.1	CDY66007	AT4G25660.1	21798944
AT2G33390.1	CDX70995	AT5G22290.1	21798944
AT2G33390.1	CDX88803	AT5G22290.1	21798944
AT2G33390.1	CDX92368	AT5G22290.1	21798944
AT2G33390.1	CDY09128	AT5G22290.1	21798944
AT2G33390.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17170	Canola	cytosol, nucleus, plastid	95.19	95.19
AT2G33390.1	Thale cress	cytosol, extracellular, nucleus	81.73	86.73
CDX84690	Canola	cytosol, nucleus, plastid	71.15	82.22
CDY23741	Canola	cytosol, nucleus, plastid	77.88	79.41
CDX79525	Canola	cytosol, nucleus, plastid	69.23	79.12
Bra005499.1-P	Field mustard	cytosol, nucleus, plastid	71.15	77.08
KRH33624	Soybean	cytosol, nucleus, plastid	50.0	53.06
VIT_05s0049g01730.t01	Wine grape	cytosol, nucleus, plastid	45.19	51.09
PGSC0003DMT400044192	Potato	nucleus	46.15	49.48
Solyc09g090540.2.1	Tomato	nucleus	45.19	48.45
KRH34540	Soybean	nucleus	47.12	45.37
KRG92271	Soybean	nucleus	47.12	44.95
KRG90361	Soybean	cytosol, nucleus, plastid	39.42	36.28
CDY18728	Canola	nucleus	60.58	35.2

Protein Annotations

EnsemblPlants:CDY19489	EnsemblPlantsGene:GSBRNA2T00009090001	GO:GO:0008150	GO:GO:0009628	GO:GO:0009642	InterPro:OHP2
PANTHER:PTHR33401	PANTHER:PTHR33401:SF2	ProteinID:CDY19489	ProteinID:CDY19489.1	SEG:seg	UniParc:UPI0004EC1593
UniProt:A0A078G1Y9	MapMan:35.2	:	:	:	:

Description

BnaC04g11100DBnaC04g11100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1Y9]

Coordinates

chrLK032096:+:650566..651974

Molecular Weight (calculated)

11548.0 Da

IEP (calculated)

3.818

GRAVY (calculated)

-0.978

Length

104 amino acids

Sequence
(BLAST)

001: METTCGEDKE ANGRENGDKD VVVVSLKSSE PEDQISEEEE EESESQCLLP PRKGGMSRST DKIKRTVQWN DIKGDNLAEV LVYEPSEVSD TDDDDSDSCI
101: CTIM

Best Arabidopsis Sequence Match ( AT2G33390.1 )
(BLAST)

1: MDTGRGEGKE ANGCENKAIV SLNSSEIEDQ IFEEEESESQ CLLPPRKGGM SRSTDKIKRT VQWNDIKGDN LAEVLVYEPS EVSDTEDDDS DSCICTIM

Arabidopsis Description

Putative uncharacterized protein At2g33390 [Source:UniProtKB/TrEMBL;Acc:O22789]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.