Factsheet for Bra005499.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra016705.1-P
Bra019660.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33390.1	Bra016705.1-P	AT1G14340.1	21798944
AT2G33390.1	Bra019660.1-P	AT1G14340.1	21798944
AT2G33390.1	Bra010452.1-P	AT4G25660.1	21798944
AT2G33390.1	Bra013908.1-P	AT4G25660.1	21798944
AT2G33390.1	Bra013910.1-P	AT4G25660.1	21798944
AT2G33390.1	Bra002403.1-P	AT5G22290.1	21798944
AT2G33390.1	Bra006619.1-P	AT5G22290.1	21798944
AT2G33390.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17170	Canola	cytosol, nucleus, plastid	79.17	73.08
Bra021848.1-P	Field mustard	cytosol, nucleus, plastid	63.54	71.76
CDY19489	Canola	cytosol, nucleus, plastid	77.08	71.15
AT2G33390.1	Thale cress	cytosol, extracellular, nucleus	67.71	66.33
Bra022937.1-P	Field mustard	cytosol, nucleus, plastid	61.46	65.56
KRH33624	Soybean	cytosol, nucleus, plastid	39.58	38.78
KRG90361	Soybean	cytosol, nucleus, plastid	41.67	35.4
KRH34540	Soybean	nucleus	39.58	35.19
KRG92271	Soybean	nucleus	39.58	34.86
VIT_05s0049g01730.t01	Wine grape	cytosol, nucleus, plastid	33.33	34.78
PGSC0003DMT400044192	Potato	nucleus	33.33	32.99
Solyc09g090540.2.1	Tomato	nucleus	33.33	32.99

Protein Annotations

EnsemblPlants:Bra005499.1	EnsemblPlants:Bra005499.1-P	EnsemblPlantsGene:Bra005499	GO:GO:0008150	GO:GO:0009628	GO:GO:0009642
InterPro:OHP2	ncoils:Coil	PANTHER:PTHR33401	PANTHER:PTHR33401:SF2	SEG:seg	UniParc:UPI00025473FE
UniProt:M4CMR1	MapMan:35.2	:	:	:	:

Description

AT2G33390 (E=5e-024) | unknown protein

Coordinates

chrA05:-:5818873..5819163

Molecular Weight (calculated)

10967.7 Da

IEP (calculated)

4.327

GRAVY (calculated)

-0.905

Length

96 amino acids

Sequence
(BLAST)

1: METTCGEDKE ANGCENGHKA AVVRLEDQIS EEEEEESESQ CLLPPRKGGM SRSTDKIKRT VQWNDIKGDN LAEVLVYEPR YNIRNNNLCF DWFSAV

Best Arabidopsis Sequence Match ( AT2G33390.2 )
(BLAST)

1: MDTGRGEGKE ANGCENKAIV SLNSSEIEDQ IFEEEESESQ CLLPPRKGGM SRSTDKIKRT VQWNDIKGDN LAEVLVYEPS SYLNVNDLQM RDSYRKP

Arabidopsis Description

Putative uncharacterized protein At2g33390 [Source:UniProtKB/TrEMBL;Acc:O22789]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.