Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g082060.1.1 | |
| Solyc05g007200.2.1 | |
| Solyc06g074170.2.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044192 | Potato | nucleus | 96.91 | 96.91 |
| KRH33624 | Soybean | cytosol, nucleus, plastid | 51.55 | 51.02 |
| VIT_05s0049g01730.t01 | Wine grape | cytosol, nucleus, plastid | 47.42 | 50.0 |
| Bra022937.1-P | Field mustard | cytosol, nucleus, plastid | 44.33 | 47.78 |
| CDX84690 | Canola | cytosol, nucleus, plastid | 44.33 | 47.78 |
| CDX79525 | Canola | cytosol, nucleus, plastid | 44.33 | 47.25 |
| KRH34540 | Soybean | nucleus | 52.58 | 47.22 |
| CDY17170 | Canola | cytosol, nucleus, plastid | 49.48 | 46.15 |
| AT2G33390.1 | Thale cress | cytosol, extracellular, nucleus | 46.39 | 45.92 |
| CDY19489 | Canola | cytosol, nucleus, plastid | 48.45 | 45.19 |
| KRG92271 | Soybean | nucleus | 50.52 | 44.95 |
| CDY23741 | Canola | cytosol, nucleus, plastid | 46.39 | 44.12 |
| Bra021848.1-P | Field mustard | cytosol, nucleus, plastid | 31.96 | 36.47 |
| KRG90361 | Soybean | cytosol, nucleus, plastid | 39.18 | 33.63 |
| Bra005499.1-P | Field mustard | cytosol, nucleus, plastid | 32.99 | 33.33 |
| CDY18728 | Canola | nucleus | 40.21 | 21.79 |
Protein Annotations
| EnsemblPlants:Solyc09g090540.2.1 | EnsemblPlantsGene:Solyc09g090540.2 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009642 | InterPro:OHP2 |
| PANTHER:PTHR33401 | PANTHER:PTHR33401:SF2 | SEG:seg | UniParc:UPI000276AD86 | UniProt:K4CW80 | MapMan:35.2 |
Description
No Description!
Coordinates
chr9:-:70031459..70034778
Molecular Weight (calculated)
10718.4 Da
IEP (calculated)
4.500
GRAVY (calculated)
-1.025
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MDTKSNKDLK GEKIQYVDSV EALPNSVLNG GKDEDDESKA LLPSRKGGLS KKIAKPKRKV QWNDTNGNKL TEVLEFEPSD ASDSDEDDSD SCICRIM
1: MDTGRGEGKE ANGCENKAIV SLNSSEIEDQ IFEEEESESQ CLLPPRKGGM SRSTDKIKRT VQWNDIKGDN LAEVLVYEPS EVSDTEDDDS DSCICTIM
Arabidopsis Description
Putative uncharacterized protein At2g33390 [Source:UniProtKB/TrEMBL;Acc:O22789]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.