Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04330.1 | KRH52586 | AT1G22920.1 | 21798944 |
| AT1G04330.1 | KRH61926 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34513 | Soybean | plastid | 94.62 | 94.62 |
| VIT_05s0049g00140.t01 | Wine grape | plastid | 61.29 | 54.81 |
| PGSC0003DMT400034981 | Potato | cytosol | 32.26 | 47.62 |
| PGSC0003DMT400042096 | Potato | plastid | 56.99 | 46.09 |
| Solyc06g053700.1.1 | Tomato | nucleus | 56.99 | 46.09 |
| AT1G04330.1 | Thale cress | plastid | 46.24 | 43.0 |
| CDX85063 | Canola | plastid | 48.39 | 42.86 |
| CDX77544 | Canola | plastid | 48.39 | 42.06 |
| Bra014915.1-P | Field mustard | plastid | 48.39 | 42.06 |
| Bra015304.1-P | Field mustard | nucleus, plastid | 45.16 | 42.0 |
| CDY18219 | Canola | mitochondrion, plastid | 45.16 | 42.0 |
| CDY60670 | Canola | nucleus, plastid | 45.16 | 42.0 |
| PGSC0003DMT400044456 | Potato | plastid | 51.61 | 41.74 |
| CDY32540 | Canola | mitochondrion | 41.94 | 41.49 |
| Bra001905.1-P | Field mustard | plastid | 45.16 | 40.78 |
| Solyc09g089650.1.1 | Tomato | plastid | 50.54 | 40.52 |
| AT3G23170.1 | Thale cress | plastid | 46.24 | 40.19 |
| AT4G14450.1 | Thale cress | plastid | 53.76 | 40.0 |
| CDY23156 | Canola | plastid | 43.01 | 37.74 |
| CDY12774 | Canola | plastid | 43.01 | 37.74 |
| Bra033482.1-P | Field mustard | plastid | 43.01 | 37.74 |
| KRG90382 | Soybean | cytosol, mitochondrion, nucleus, plastid | 65.59 | 37.2 |
| CDY52423 | Canola | cytosol | 31.18 | 26.61 |
| Bra032517.1-P | Field mustard | nucleus, plastid | 24.73 | 24.21 |
Protein Annotations
| EMBL:ACUP02012737 | EnsemblPlants:KRG92296 | EnsemblPlantsGene:GLYMA_20G202600 | EntrezGene:102662199 | PANTHER:PTHR33912 | PANTHER:PTHR33912:SF2 |
| ProteinID:KRG92296 | ProteinID:KRG92296.1 | SEG:seg | UniParc:UPI0001BA87E2 | UniProt:I1NI17 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr20:-:43959850..43960931
Molecular Weight (calculated)
10529.7 Da
IEP (calculated)
10.814
GRAVY (calculated)
-0.712
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MSNPQTNNNR RQPSRLQRRA PSSLQINRAV EWNVAIPLLS PLASSPTPIE LKPPQEPPQR EPEKVTLSFK KWQHPAAPFC YEPAPMVPPF VPV
001: MFFDTKVLNY PTIHKSISMA STMQRTSSSA ASNERQLSQL QRRAPSLMIK PTSFSNWNVA IPLLSPLAPS LTSSFDQSHV PPPQNKTEIP VEEEVKKTPV
101: FKKWQHPASP FCYEPTTFVP PFIQV
101: FKKWQHPASP FCYEPTTFVP PFIQV
Arabidopsis Description
Uncharacterized protein At4g14450, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6NN02]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.