Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04330.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT1G04330.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT1G04330.1 | CDY25761 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G04330.1 | Thale cress | plastid | 90.43 | 85.0 |
| CDY18219 | Canola | mitochondrion, plastid | 87.23 | 82.0 |
| CDY60670 | Canola | nucleus, plastid | 86.17 | 81.0 |
| Bra032517.1-P | Field mustard | nucleus, plastid | 65.96 | 65.26 |
| KRG92296 | Soybean | plastid | 41.49 | 41.94 |
| CDX85063 | Canola | plastid | 46.81 | 41.9 |
| CDX77544 | Canola | plastid | 46.81 | 41.12 |
| KRH34513 | Soybean | plastid | 40.43 | 40.86 |
| VIT_05s0049g00140.t01 | Wine grape | plastid | 43.62 | 39.42 |
| CDY23156 | Canola | plastid | 40.43 | 35.85 |
| CDY12774 | Canola | plastid | 39.36 | 34.91 |
| Solyc09g089650.1.1 | Tomato | plastid | 41.49 | 33.62 |
| PGSC0003DMT400044456 | Potato | plastid | 40.43 | 33.04 |
| Solyc06g053700.1.1 | Tomato | nucleus | 38.3 | 31.3 |
| PGSC0003DMT400042096 | Potato | plastid | 37.23 | 30.43 |
| PGSC0003DMT400034981 | Potato | cytosol | 20.21 | 30.16 |
| CDY52423 | Canola | cytosol | 29.79 | 25.69 |
| KRG90382 | Soybean | cytosol, mitochondrion, nucleus, plastid | 40.43 | 23.17 |
Protein Annotations
| EnsemblPlants:CDY32540 | EnsemblPlantsGene:GSBRNA2T00052528001 | PANTHER:PTHR33912 | PANTHER:PTHR33912:SF2 | ProteinID:CDY32540 | ProteinID:CDY32540.1 |
| SEG:seg | UniParc:UPI0004EE52D1 | UniProt:A0A078H1M3 | MapMan:35.2 | : | : |
Description
BnaA09g50560DBnaA09g50560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1M3]
Coordinates
chrLK032295:-:443593..443877
Molecular Weight (calculated)
10808.0 Da
IEP (calculated)
11.486
GRAVY (calculated)
-1.079
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSTARNRKS SRLQRRAPPP LKINPSVANW KIVIPLLPPT ESPPQKPPTA MKREEQRWGK EVEKPPVFKK WQHPAAPFYY QPGPSSNQPF AWPN
1: MSSTARNISG SGNRKSSRLQ RRAPPPLKIN PCEANWKVAI PLLSPTESPP QKPPAVMKRE EQRWGKEAEK PPVFKKWQHP AAPFYYQPAP SSNQPFAWPN
Arabidopsis Description
At1g04330 [Source:UniProtKB/TrEMBL;Acc:O22691]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.