Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g073150.2.1 | |
| Solyc11g017300.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04330.1 | Solyc06g073150.2.1 | AT1G22920.1 | 21798944 |
| AT1G04330.1 | Solyc11g017300.1.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044456 | Potato | plastid | 91.38 | 92.17 |
| Solyc06g053700.1.1 | Tomato | nucleus | 59.48 | 60.0 |
| KRG92296 | Soybean | plastid | 40.52 | 50.54 |
| KRH34513 | Soybean | plastid | 39.66 | 49.46 |
| VIT_05s0049g00140.t01 | Wine grape | plastid | 41.38 | 46.15 |
| AT1G04330.1 | Thale cress | plastid | 38.79 | 45.0 |
| CDY18219 | Canola | mitochondrion, plastid | 37.07 | 43.0 |
| CDY60670 | Canola | nucleus, plastid | 37.07 | 43.0 |
| Bra015304.1-P | Field mustard | nucleus, plastid | 37.07 | 43.0 |
| CDY32540 | Canola | mitochondrion | 33.62 | 41.49 |
| AT3G23170.1 | Thale cress | plastid | 36.21 | 39.25 |
| Bra001905.1-P | Field mustard | plastid | 34.48 | 38.84 |
| Bra033482.1-P | Field mustard | plastid | 35.34 | 38.68 |
| CDY23156 | Canola | plastid | 35.34 | 38.68 |
| CDY12774 | Canola | plastid | 34.48 | 37.74 |
| CDX77544 | Canola | plastid | 34.48 | 37.38 |
| Bra014915.1-P | Field mustard | plastid | 34.48 | 37.38 |
| CDX85063 | Canola | plastid | 33.62 | 37.14 |
| AT4G14450.1 | Thale cress | plastid | 36.21 | 33.6 |
| KRG90382 | Soybean | cytosol, mitochondrion, nucleus, plastid | 37.93 | 26.83 |
| CDY52423 | Canola | cytosol | 25.0 | 26.61 |
| Bra032517.1-P | Field mustard | nucleus, plastid | 20.69 | 25.26 |
Protein Annotations
| EnsemblPlants:Solyc09g089650.1.1 | EnsemblPlantsGene:Solyc09g089650.1 | PANTHER:PTHR33912 | PANTHER:PTHR33912:SF2 | SEG:seg | UniParc:UPI000276C93D |
| UniProt:K4CVZ1 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:69415867..69416217
Molecular Weight (calculated)
12969.4 Da
IEP (calculated)
11.335
GRAVY (calculated)
-0.760
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MSINHRTSTG DRRNPSRLQR RAPASIQINR PTDWNVAIPL LSPLITSPVS PDAGNLKSVI NRLSNSNSNS NSSNSKKEEV KKELPVFKKW QHPAAPFYHE
101: PAPLIQFLCT GTADRR
101: PAPLIQFLCT GTADRR
1: MSSTARNISG SGNRKSSRLQ RRAPPPLKIN PCEANWKVAI PLLSPTESPP QKPPAVMKRE EQRWGKEAEK PPVFKKWQHP AAPFYYQPAP SSNQPFAWPN
Arabidopsis Description
At1g04330 [Source:UniProtKB/TrEMBL;Acc:O22691]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.