Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012351.1-P | |
| Bra024548.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04330.1 | Bra012351.1-P | AT1G22920.1 | 21798944 |
| AT1G04330.1 | Bra024548.1-P | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60670 | Canola | nucleus, plastid | 100.0 | 100.0 |
| AT1G04330.1 | Thale cress | plastid | 89.0 | 89.0 |
| Bra032517.1-P | Field mustard | nucleus, plastid | 51.0 | 53.68 |
| KRG92296 | Soybean | plastid | 42.0 | 45.16 |
| KRH34513 | Soybean | plastid | 42.0 | 45.16 |
| VIT_05s0049g00140.t01 | Wine grape | plastid | 44.0 | 42.31 |
| Bra014915.1-P | Field mustard | plastid | 45.0 | 42.06 |
| Bra001905.1-P | Field mustard | plastid | 40.0 | 38.84 |
| Solyc09g089650.1.1 | Tomato | plastid | 43.0 | 37.07 |
| PGSC0003DMT400044456 | Potato | plastid | 42.0 | 36.52 |
| Bra033482.1-P | Field mustard | plastid | 38.0 | 35.85 |
| PGSC0003DMT400034981 | Potato | cytosol | 22.0 | 34.92 |
| Solyc06g053700.1.1 | Tomato | nucleus | 39.0 | 33.91 |
| PGSC0003DMT400042096 | Potato | plastid | 38.0 | 33.04 |
| KRG90382 | Soybean | cytosol, mitochondrion, nucleus, plastid | 38.0 | 23.17 |
Protein Annotations
Description
AT1G04330 (E=3e-051) | unknown protein
Coordinates
chrA10:+:2569834..2570136
Molecular Weight (calculated)
11339.6 Da
IEP (calculated)
11.320
GRAVY (calculated)
-1.109
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSTARNISG GGNRKSSRLQ RRAPPPLKIN PSEANWKVPI PLLSPTESPP PKPQMVTKRD EQRWGKEVEK PPIFKKWQHP AAPFYYQPAP SSNKPFAWPN
1: MSSTARNISG SGNRKSSRLQ RRAPPPLKIN PCEANWKVAI PLLSPTESPP QKPPAVMKRE EQRWGKEAEK PPVFKKWQHP AAPFYYQPAP SSNQPFAWPN
Arabidopsis Description
At1g04330 [Source:UniProtKB/TrEMBL;Acc:O22691]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.