Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023896 | |
| PGSC0003DMT400069203 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04330.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT1G04330.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34513 | Soybean | plastid | 47.62 | 32.26 |
| KRG92296 | Soybean | plastid | 47.62 | 32.26 |
| PGSC0003DMT400042096 | Potato | plastid | 58.73 | 32.17 |
| VIT_05s0049g00140.t01 | Wine grape | plastid | 50.79 | 30.77 |
| PGSC0003DMT400044456 | Potato | plastid | 55.56 | 30.43 |
| CDY23156 | Canola | plastid | 42.86 | 25.47 |
| Bra033482.1-P | Field mustard | plastid | 42.86 | 25.47 |
| CDY12774 | Canola | plastid | 42.86 | 25.47 |
| AT3G23170.1 | Thale cress | plastid | 42.86 | 25.23 |
| CDX85063 | Canola | plastid | 39.68 | 23.81 |
| CDX77544 | Canola | plastid | 39.68 | 23.36 |
| Bra014915.1-P | Field mustard | plastid | 39.68 | 23.36 |
| Bra001905.1-P | Field mustard | plastid | 36.51 | 22.33 |
| CDY18219 | Canola | mitochondrion, plastid | 34.92 | 22.0 |
| CDY60670 | Canola | nucleus, plastid | 34.92 | 22.0 |
| Bra015304.1-P | Field mustard | nucleus, plastid | 34.92 | 22.0 |
| AT1G04330.1 | Thale cress | plastid | 33.33 | 21.0 |
| CDY32540 | Canola | mitochondrion | 30.16 | 20.21 |
| Bra032517.1-P | Field mustard | nucleus, plastid | 28.57 | 18.95 |
| KRG90382 | Soybean | cytosol, mitochondrion, nucleus, plastid | 49.21 | 18.9 |
| AT4G14450.1 | Thale cress | plastid | 36.51 | 18.4 |
| CDY52423 | Canola | cytosol | 17.46 | 10.09 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400034981 | EnsemblPlantsGene:PGSC0003DMG400013448 | PANTHER:PTHR33912 | PANTHER:PTHR33912:SF2 | PGSC:PGSC0003DMG400013448 | SEG:seg |
| UniParc:UPI000296E085 | UniProt:M1B1M0 | MapMan:35.2 | : | : | : |
Description
ATBET12 [Source:PGSC_GENE;Acc:PGSC0003DMG400013448]
Coordinates
chr3:-:531476..532590
Molecular Weight (calculated)
6866.0 Da
IEP (calculated)
6.465
GRAVY (calculated)
-0.260
Length
63 amino acids
Sequence
(BLAST)
(BLAST)
1: MADIKQASTF SGDQQRPSRL QWRAPASIQI NCATDWNVGI PLLSPLISSP KSSNLTAADE FSF
1: MSSTARNISG SGNRKSSRLQ RRAPPPLKIN PCEANWKVAI PLLSPTESPP QKPPAVMKRE EQRWGKEAEK PPVFKKWQHP AAPFYYQPAP SSNQPFAWPN
Arabidopsis Description
At1g04330 [Source:UniProtKB/TrEMBL;Acc:O22691]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.