CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23156	Canola	plastid	94.34	94.34
AT4G14450.1	Thale cress	plastid	59.43	50.4
CDX85063	Canola	plastid	47.17	47.62
CDX77544	Canola	plastid	46.23	45.79
KRG92296	Soybean	plastid	37.74	43.01
PGSC0003DMT400034981	Potato	cytosol	25.47	42.86
KRH34513	Soybean	plastid	36.79	41.94
VIT_05s0049g00140.t01	Wine grape	plastid	40.57	41.35
CDY32540	Canola	mitochondrion	34.91	39.36
PGSC0003DMT400042096	Potato	plastid	41.51	38.26
CDY60670	Canola	nucleus, plastid	35.85	38.0
CDY18219	Canola	mitochondrion, plastid	35.85	38.0
Solyc06g053700.1.1	Tomato	nucleus	40.57	37.39
PGSC0003DMT400044456	Potato	plastid	37.74	34.78
Solyc09g089650.1.1	Tomato	plastid	37.74	34.48
CDY52423	Canola	cytosol	30.19	29.36
KRG90382	Soybean	cytosol, mitochondrion, nucleus, plastid	41.51	26.83

Protein Annotations

EnsemblPlants:CDY12774	EnsemblPlantsGene:GSBRNA2T00070370001	PANTHER:PTHR33912	PANTHER:PTHR33912:SF2	ProteinID:CDY12774	ProteinID:CDY12774.1
SEG:seg	UniParc:UPI0004EF0925	UniProt:A0A078FIG1	MapMan:35.1	:	:

Description

BnaC04g28670DBnaC04g28670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIG1]

Coordinates

chrLK032026:+:829452..829772

Molecular Weight (calculated)

11642.7 Da

IEP (calculated)

9.818

GRAVY (calculated)

-0.435

Length

106 amino acids

Sequence
(BLAST)

001: MASTMAETSS SNVRDNRPSN KLQSRLPSLK IEITSVTTWN VAIPLLSPLA SSPKSSFDQS AVASSQNQAE KPADEVKKTP VFKKWQHPAS PFCYDQTTFV
101: QPFISV

Best Arabidopsis Sequence Match ( AT4G14450.1 )
(BLAST)

001: MFFDTKVLNY PTIHKSISMA STMQRTSSSA ASNERQLSQL QRRAPSLMIK PTSFSNWNVA IPLLSPLAPS LTSSFDQSHV PPPQNKTEIP VEEEVKKTPV
101: FKKWQHPASP FCYEPTTFVP PFIQV

Arabidopsis Description

Uncharacterized protein At4g14450, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6NN02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.