Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001905.1-P | Field mustard | plastid | 54.13 | 57.28 |
| CDX77544 | Canola | plastid | 39.45 | 40.19 |
| CDX85063 | Canola | plastid | 38.53 | 40.0 |
| AT3G23170.1 | Thale cress | plastid | 37.61 | 38.32 |
| VIT_05s0049g00140.t01 | Wine grape | plastid | 32.11 | 33.65 |
| KRG92296 | Soybean | plastid | 26.61 | 31.18 |
| CDY23156 | Canola | plastid | 30.28 | 31.13 |
| CDY12774 | Canola | plastid | 29.36 | 30.19 |
| KRH34513 | Soybean | plastid | 25.69 | 30.11 |
| CDY32540 | Canola | mitochondrion | 25.69 | 29.79 |
| PGSC0003DMT400042096 | Potato | plastid | 29.36 | 27.83 |
| CDY18219 | Canola | mitochondrion, plastid | 24.77 | 27.0 |
| CDY60670 | Canola | nucleus, plastid | 24.77 | 27.0 |
| Solyc06g053700.1.1 | Tomato | nucleus | 28.44 | 26.96 |
| PGSC0003DMT400044456 | Potato | plastid | 26.61 | 25.22 |
| Solyc09g089650.1.1 | Tomato | plastid | 26.61 | 25.0 |
| KRG90382 | Soybean | cytosol, mitochondrion, nucleus, plastid | 30.28 | 20.12 |
| PGSC0003DMT400034981 | Potato | cytosol | 10.09 | 17.46 |
Protein Annotations
| EnsemblPlants:CDY52423 | EnsemblPlantsGene:GSBRNA2T00006945001 | ProteinID:CDY52423 | ProteinID:CDY52423.1 | SEG:seg | UniParc:UPI0004EE096F |
| UniProt:A0A078ITP7 | MapMan:35.2 | : | : | : | : |
Description
BnaC03g74490DBnaC03g74490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITP7]
Coordinates
chrLK033085:-:1516..2628
Molecular Weight (calculated)
12127.5 Da
IEP (calculated)
11.015
GRAVY (calculated)
-0.650
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTKMRKRTR VKGRKIPGPE GFTFYVNDDG ETRPQLRFRN SAASQSSTKA TSVVKHPLSP ESPVNQPPVE NQTKAVTATV APVFKTWQHP AAPFCYEPSS
101: TFVPPFVPV
101: TFVPPFVPV
001: MSTTMKRQGC SSDSGDLRRQ PSRLLKRPPA LKIVPATPAA NNWNTAIPLL SPLALSPESS PVDQPPVEKN QSTAVAVEKT PVFKKWQHPA APFYYESSTF
101: VPPFVPV
101: VPPFVPV
Arabidopsis Description
At3g23170 [Source:UniProtKB/TrEMBL;Acc:Q9LTD3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.