Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85063 | Canola | plastid | 71.03 | 72.38 |
| CDX77544 | Canola | plastid | 70.09 | 70.09 |
| Bra001905.1-P | Field mustard | plastid | 67.29 | 69.9 |
| Bra014915.1-P | Field mustard | plastid | 69.16 | 69.16 |
| VIT_05s0049g00140.t01 | Wine grape | plastid | 45.79 | 47.12 |
| KRG92296 | Soybean | plastid | 40.19 | 46.24 |
| KRH34513 | Soybean | plastid | 40.19 | 46.24 |
| AT1G04330.1 | Thale cress | plastid | 42.99 | 46.0 |
| PGSC0003DMT400034981 | Potato | cytosol | 25.23 | 42.86 |
| AT4G14450.1 | Thale cress | plastid | 49.53 | 42.4 |
| CDY52423 | Canola | cytosol | 38.32 | 37.61 |
| Solyc06g053700.1.1 | Tomato | nucleus | 39.25 | 36.52 |
| Solyc09g089650.1.1 | Tomato | plastid | 39.25 | 36.21 |
| PGSC0003DMT400042096 | Potato | plastid | 38.32 | 35.65 |
| PGSC0003DMT400044456 | Potato | plastid | 37.38 | 34.78 |
| KRG90382 | Soybean | cytosol, mitochondrion, nucleus, plastid | 42.99 | 28.05 |
Protein Annotations
| MapMan:35.2 | EntrezGene:821893 | ProteinID:AEE76728.1 | ArrayExpress:AT3G23170 | EnsemblPlantsGene:AT3G23170 | RefSeq:AT3G23170 |
| TAIR:AT3G23170 | RefSeq:AT3G23170-TAIR-G | EnsemblPlants:AT3G23170.1 | TAIR:AT3G23170.1 | ProteinID:BAA95728.1 | EMBL:BT025582 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009814 | RefSeq:NP_566723.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR33912 | PANTHER:PTHR33912:SF2 |
| UniProt:Q9LTD3 | UniParc:UPI000009CB03 | SEG:seg | : | : | : |
Description
At3g23170 [Source:UniProtKB/TrEMBL;Acc:Q9LTD3]
Coordinates
chr3:-:8267920..8268961
Molecular Weight (calculated)
11698.0 Da
IEP (calculated)
10.323
GRAVY (calculated)
-0.404
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTMKRQGC SSDSGDLRRQ PSRLLKRPPA LKIVPATPAA NNWNTAIPLL SPLALSPESS PVDQPPVEKN QSTAVAVEKT PVFKKWQHPA APFYYESSTF
101: VPPFVPV
101: VPPFVPV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.