Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023896 | |
| PGSC0003DMT400069203 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G04330.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT1G04330.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053700.1.1 | Tomato | nucleus | 96.52 | 96.52 |
| PGSC0003DMT400044456 | Potato | plastid | 61.74 | 61.74 |
| PGSC0003DMT400034981 | Potato | cytosol | 32.17 | 58.73 |
| KRG92296 | Soybean | plastid | 46.09 | 56.99 |
| KRH34513 | Soybean | plastid | 44.35 | 54.84 |
| VIT_05s0049g00140.t01 | Wine grape | plastid | 47.83 | 52.88 |
| Bra033482.1-P | Field mustard | plastid | 39.13 | 42.45 |
| CDY23156 | Canola | plastid | 39.13 | 42.45 |
| CDY12774 | Canola | plastid | 38.26 | 41.51 |
| Bra001905.1-P | Field mustard | plastid | 36.52 | 40.78 |
| AT1G04330.1 | Thale cress | plastid | 34.78 | 40.0 |
| AT3G23170.1 | Thale cress | plastid | 35.65 | 38.32 |
| CDX77544 | Canola | plastid | 35.65 | 38.32 |
| Bra014915.1-P | Field mustard | plastid | 35.65 | 38.32 |
| CDX85063 | Canola | plastid | 34.78 | 38.1 |
| CDY18219 | Canola | mitochondrion, plastid | 33.04 | 38.0 |
| CDY60670 | Canola | nucleus, plastid | 33.04 | 38.0 |
| Bra015304.1-P | Field mustard | nucleus, plastid | 33.04 | 38.0 |
| AT4G14450.1 | Thale cress | plastid | 40.87 | 37.6 |
| CDY32540 | Canola | mitochondrion | 30.43 | 37.23 |
| CDY52423 | Canola | cytosol | 27.83 | 29.36 |
| KRG90382 | Soybean | cytosol, mitochondrion, nucleus, plastid | 40.87 | 28.66 |
| Bra032517.1-P | Field mustard | nucleus, plastid | 17.39 | 21.05 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400042096 | EnsemblPlantsGene:PGSC0003DMG400016324 | EntrezGene:102592240 | PANTHER:PTHR33912 | PANTHER:PTHR33912:SF2 | PGSC:PGSC0003DMG400016324 |
| RefSeq:XP_006350681.1 | SEG:seg | UniParc:UPI000295E44E | UniProt:M1BCI0 | MapMan:35.2 | : |
Description
ATBET12 [Source:PGSC_GENE;Acc:PGSC0003DMG400016324]
Coordinates
chr6:+:39782787..39783603
Molecular Weight (calculated)
12764.2 Da
IEP (calculated)
9.832
GRAVY (calculated)
-0.511
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MADNKPLISS SGDRRQPSRL QRRAPASIQV DRVTDWNVAI PLLSPLITSP TSPESDNLKA AINAFSSSVH KEEVKKEHTE KPVMVFKKWQ HPASPFCYEP
101: APLVPFVCAG SADRR
101: APLVPFVCAG SADRR
001: MFFDTKVLNY PTIHKSISMA STMQRTSSSA ASNERQLSQL QRRAPSLMIK PTSFSNWNVA IPLLSPLAPS LTSSFDQSHV PPPQNKTEIP VEEEVKKTPV
101: FKKWQHPASP FCYEPTTFVP PFIQV
101: FKKWQHPASP FCYEPTTFVP PFIQV
Arabidopsis Description
Uncharacterized protein At4g14450, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6NN02]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.