CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g01660.t01	Wine grape	cytosol	78.22	77.31
Solyc09g011880.2.1	Tomato	nucleus	72.6	71.93
PGSC0003DMT400052379	Potato	cytosol	72.83	71.82
CDX91423	Canola	cytosol	63.93	65.78
AT2G38000.1	Thale cress	cytosol	63.93	65.16
CDX74919	Canola	cytosol	62.76	64.89
Bra005144.1-P	Field mustard	cytosol	62.3	64.56
GSMUA_Achr6P14970_001	Banana	nucleus	65.34	64.43
TraesCS2A01G136800.1	Wheat	nucleus	58.31	58.45
OQU83401	Sorghum	nucleus	61.59	57.3
HORVU2Hr1G024150.5	Barley	nucleus	61.36	56.34
TraesCS2B01G160700.1	Wheat	nucleus	60.66	56.06
TraesCS2D01G139500.1	Wheat	nucleus	60.89	55.79
Os05t0316200-01	Rice	cytosol, nucleus, plastid	61.12	55.77
TraesCS2D01G139400.1	Wheat	nucleus	57.14	53.39
TraesCS2B01G160600.1	Wheat	nucleus	56.44	53.2
TraesCS2A01G136700.1	Wheat	nucleus	55.74	52.42
HORVU2Hr1G024160.1	Barley	cytosol	53.16	50.11
Zm00001d049192_P002	Maize	extracellular	26.93	46.0

Protein Annotations

EMBL:ACUP02004344	EnsemblPlants:KRH49254	EnsemblPlantsGene:GLYMA_07G143100	EntrezGene:100816518	PANTHER:PTHR15852	PANTHER:PTHR15852:SF20
ProteinID:KRH49254	ProteinID:KRH49254.1	SEG:seg	UniParc:UPI0002338EF1	UniProt:I1KK89	MapMan:35.2

Description

hypothetical protein

Coordinates

chr7:-:17046489..17051160

Molecular Weight (calculated)

47112.9 Da

IEP (calculated)

6.915

GRAVY (calculated)

-0.274

Length

427 amino acids

Sequence
(BLAST)

001: MEAPLLLSEK RTGSIEVESG KWSSYQYVGG TGSVRPTSSL AGTEVSVDEI RSAAAASGYY PPSLHGALVG SPEPDPTEQA LVYQGGYGGD YGGPTPQFQR
101: KILDEVEIRE LLIDHVGHRC CWGSRPARTW RIHAVEDCNV YVGTLDTFIE EREIIRETEP YLGGSIDGKD NGPELGIWEL DLRSQFPVLF EPYKEVREKI
201: PHSEVIEKCT VCAGRGSTVC ATCNADQEPG FYKENQMTQC ATCYGRGLIA HKDGSDTVCV KCNGKGKIPC VTCGSRGLIK CATCNGSGSL LARNLAIIRW
301: KTLSTRKVNA TSGAASVPDE VFHRSKGVQL CNTQAYQCTP AFFADSYFLN KFSSDVIAER AQVPATARVI CERHAISVVP VTRVTMAHRR QSFSFYIIEY
401: GREVYLKDYY PARYCWGLCP CLEWLKL

Best Arabidopsis Sequence Match ( AT2G38000.1 )
(BLAST)

001: MDKPLLSGSE KTNESERLDS YQYLQRNSSS ARNPSFAGAG VVTVEEIRTA SAVSSDPPSL YPPVIKTPVS LPIPQAIGYP SASGAGHELQ QRQFLDEIEI
101: RELLIDHIGH RCCWGSRPAR TWKIHAVEDC NVYVGTLDTF IEEREALTQT VPFTGGEFNG KKHGSEPGLW ELDLRPQFPT LFVPYKETQV LVPNSETVEK
201: CTGCTGRGDV VCPTCNADGE PGFYKENQMM KCSTCYGRGL VAHKDGSDTI CTNCNGKGKL PCPTCQSRGL IKCQTCDSTG SLLTSSIAVV KWKTLSKRKV
301: SATRGAGSVP EEVFDRAEGV QLCNTQAYQC TPAYFADSYF LNRFSSEVIS LRAEVPPTAN VVCERHTISV VPVTRVTMED RGKAFSFYII GFGKEIYLKD
401: YYPARFCWGL CPCLEWLKV

Arabidopsis Description

Chaperone protein dnaJ-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SH87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.