Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91423 | Canola | cytosol | 87.59 | 88.43 |
| Bra005144.1-P | Field mustard | cytosol | 85.92 | 87.38 |
| CDX74919 | Canola | cytosol | 85.68 | 86.92 |
| KRH49254 | Soybean | endoplasmic reticulum | 65.16 | 63.93 |
| VIT_08s0007g01660.t01 | Wine grape | cytosol | 64.92 | 62.96 |
| Solyc09g011880.2.1 | Tomato | nucleus | 64.44 | 62.65 |
| PGSC0003DMT400052379 | Potato | cytosol | 64.44 | 62.36 |
| GSMUA_Achr6P14970_001 | Banana | nucleus | 61.58 | 59.58 |
| TraesCS2A01G136800.1 | Wheat | nucleus | 55.13 | 54.23 |
| OQU83401 | Sorghum | nucleus | 57.04 | 52.07 |
| TraesCS2B01G160700.1 | Wheat | nucleus | 56.32 | 51.08 |
| TraesCS2D01G139500.1 | Wheat | nucleus | 56.32 | 50.64 |
| Os05t0316200-01 | Rice | cytosol, nucleus, plastid | 56.56 | 50.64 |
| HORVU2Hr1G024150.5 | Barley | nucleus | 56.09 | 50.54 |
| TraesCS2D01G139400.1 | Wheat | nucleus | 52.74 | 48.36 |
| TraesCS2A01G136700.1 | Wheat | nucleus | 52.27 | 48.24 |
| TraesCS2B01G160600.1 | Wheat | nucleus | 52.03 | 48.12 |
| HORVU2Hr1G024160.1 | Barley | cytosol | 49.4 | 45.7 |
| Zm00001d049192_P002 | Maize | extracellular | 23.63 | 39.6 |
Protein Annotations
| MapMan:35.2 | EntrezGene:818378 | ProteinID:AEC09476.1 | ArrayExpress:AT2G38000 | EnsemblPlantsGene:AT2G38000 | RefSeq:AT2G38000 |
| TAIR:AT2G38000 | RefSeq:AT2G38000-TAIR-G | EnsemblPlants:AT2G38000.1 | TAIR:AT2G38000.1 | EMBL:AY080880 | EMBL:AY114047 |
| InterPro:HSP_DnaJ_Cys-rich_dom_sf | RefSeq:NP_181336.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR15852 |
| PANTHER:PTHR15852:SF20 | UniProt:Q9SH87 | SUPFAM:SSF57938 | UniParc:UPI00000A2724 | : | : |
Description
Chaperone protein dnaJ-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SH87]
Coordinates
chr2:-:15903125..15905391
Molecular Weight (calculated)
46244.9 Da
IEP (calculated)
6.796
GRAVY (calculated)
-0.307
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKPLLSGSE KTNESERLDS YQYLQRNSSS ARNPSFAGAG VVTVEEIRTA SAVSSDPPSL YPPVIKTPVS LPIPQAIGYP SASGAGHELQ QRQFLDEIEI
101: RELLIDHIGH RCCWGSRPAR TWKIHAVEDC NVYVGTLDTF IEEREALTQT VPFTGGEFNG KKHGSEPGLW ELDLRPQFPT LFVPYKETQV LVPNSETVEK
201: CTGCTGRGDV VCPTCNADGE PGFYKENQMM KCSTCYGRGL VAHKDGSDTI CTNCNGKGKL PCPTCQSRGL IKCQTCDSTG SLLTSSIAVV KWKTLSKRKV
301: SATRGAGSVP EEVFDRAEGV QLCNTQAYQC TPAYFADSYF LNRFSSEVIS LRAEVPPTAN VVCERHTISV VPVTRVTMED RGKAFSFYII GFGKEIYLKD
401: YYPARFCWGL CPCLEWLKV
101: RELLIDHIGH RCCWGSRPAR TWKIHAVEDC NVYVGTLDTF IEEREALTQT VPFTGGEFNG KKHGSEPGLW ELDLRPQFPT LFVPYKETQV LVPNSETVEK
201: CTGCTGRGDV VCPTCNADGE PGFYKENQMM KCSTCYGRGL VAHKDGSDTI CTNCNGKGKL PCPTCQSRGL IKCQTCDSTG SLLTSSIAVV KWKTLSKRKV
301: SATRGAGSVP EEVFDRAEGV QLCNTQAYQC TPAYFADSYF LNRFSSEVIS LRAEVPPTAN VVCERHTISV VPVTRVTMED RGKAFSFYII GFGKEIYLKD
401: YYPARFCWGL CPCLEWLKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.