Factsheet for VIT_08s0007g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49254	Soybean	endoplasmic reticulum	77.31	78.22
Solyc09g011880.2.1	Tomato	nucleus	70.6	70.77
PGSC0003DMT400052379	Potato	cytosol	70.14	69.98
GSMUA_Achr6P14970_001	Banana	nucleus	66.2	66.05
AT2G38000.1	Thale cress	cytosol	62.96	64.92
CDX91423	Canola	cytosol	62.04	64.58
CDX74919	Canola	cytosol	61.11	63.92
Bra005144.1-P	Field mustard	cytosol	60.88	63.84
TraesCS2A01G136800.1	Wheat	nucleus	58.1	58.92
OQU83401	Sorghum	nucleus	62.27	58.61
Os05t0316200-01	Rice	cytosol, nucleus, plastid	61.81	57.05
TraesCS2B01G160700.1	Wheat	nucleus	60.88	56.93
HORVU2Hr1G024150.5	Barley	nucleus	60.88	56.56
TraesCS2D01G139500.1	Wheat	nucleus	60.88	56.44
TraesCS2D01G139400.1	Wheat	nucleus	58.56	55.36
TraesCS2B01G160600.1	Wheat	nucleus	57.64	54.97
TraesCS2A01G136700.1	Wheat	nucleus	56.94	54.19
HORVU2Hr1G024160.1	Barley	cytosol	54.17	51.66
Zm00001d049192_P002	Maize	extracellular	28.47	49.2

Protein Annotations

ArrayExpress:VIT_08s0007g01660	EMBL:AM467228	EMBL:FN595991	EnsemblPlants:VIT_08s0007g01660.t01	EnsemblPlantsGene:VIT_08s0007g01660	EntrezGene:100249497
EntrezGene:LOC100249497	PANTHER:PTHR15852	PANTHER:PTHR15852:SF20	ProteinID:CAN72578	ProteinID:CAN72578.1	ProteinID:CCB55520
ProteinID:CCB55520.1	RefSeq:XP_002277232	RefSeq:XP_002277232.1	SEG:seg	TIGR:TC63534	unigene:Vvi.1680
UniParc:UPI0001983BF2	UniProt:F6HKX8	wikigene:100249497	wikigene:LOC100249497	MapMan:35.2	:

Description

No Description!

Coordinates

chr8:-:15745092..15751254

Molecular Weight (calculated)

47742.6 Da

IEP (calculated)

6.718

GRAVY (calculated)

-0.329

Length

432 amino acids

Sequence
(BLAST)

001: MEEQQTMEVP FLSEAKSEIA DKESKRLSSY QYVGRTGSVI PTASLAGTEV SVEEIRSAAA FSDYYPPSLH AALISSPEPD PDEQAIVCQG AYGGDYGGNT
101: NEFQRQILDE VEIRELLIDH VGHRCCWGSR PARTWKIHAV EDCNVYVGTL ETFIEEREII KEREPYHGGK IDGKDKGPGL GIWELDLRSE FPVLFVPHKE
201: SCAKIPHSEA IEKCSGCAGR GDIVCSTCNP GQEPGFYNEN RMSQCPTCHG RGLIAHRDGS DTKCVKCNGK GNISCPICGS RGLIKCELCR GGGSLLTHDV
301: AVIRWKTLST RKVSATSGAA SVPDEVFHRA KGVQLCNTQA HQCTPAFFAD SFSLNKFSSE VIADRSPVPP TARVVCERHS ISVVPVTRVT MAHRRQSFSF
401: YIIGFSREVY LKDYYPSRFC WGLCPCLDWL KL

Best Arabidopsis Sequence Match ( AT2G38000.1 )
(BLAST)

001: MDKPLLSGSE KTNESERLDS YQYLQRNSSS ARNPSFAGAG VVTVEEIRTA SAVSSDPPSL YPPVIKTPVS LPIPQAIGYP SASGAGHELQ QRQFLDEIEI
101: RELLIDHIGH RCCWGSRPAR TWKIHAVEDC NVYVGTLDTF IEEREALTQT VPFTGGEFNG KKHGSEPGLW ELDLRPQFPT LFVPYKETQV LVPNSETVEK
201: CTGCTGRGDV VCPTCNADGE PGFYKENQMM KCSTCYGRGL VAHKDGSDTI CTNCNGKGKL PCPTCQSRGL IKCQTCDSTG SLLTSSIAVV KWKTLSKRKV
301: SATRGAGSVP EEVFDRAEGV QLCNTQAYQC TPAYFADSYF LNRFSSEVIS LRAEVPPTAN VVCERHTISV VPVTRVTMED RGKAFSFYII GFGKEIYLKD
401: YYPARFCWGL CPCLEWLKV

Arabidopsis Description

Chaperone protein dnaJ-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SH87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.