Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G136800.1 | Wheat | nucleus | 75.21 | 82.63 |
| TraesCS2D01G139500.1 | Wheat | nucleus | 81.2 | 81.55 |
| TraesCS2B01G160700.1 | Wheat | nucleus | 79.7 | 80.74 |
| HORVU2Hr1G024150.5 | Barley | nucleus | 80.13 | 80.65 |
| OQU83401 | Sorghum | nucleus | 78.85 | 80.39 |
| TraesCS2B01G160600.1 | Wheat | nucleus | 72.44 | 74.83 |
| TraesCS2D01G139400.1 | Wheat | nucleus | 72.22 | 73.96 |
| TraesCS2A01G136700.1 | Wheat | nucleus | 69.87 | 72.03 |
| Zm00001d049192_P002 | Maize | extracellular | 37.39 | 70.0 |
| HORVU2Hr1G024160.1 | Barley | cytosol | 64.1 | 66.23 |
| GSMUA_Achr6P14970_001 | Banana | nucleus | 59.62 | 64.43 |
| VIT_08s0007g01660.t01 | Wine grape | cytosol | 57.05 | 61.81 |
| KRH49254 | Soybean | endoplasmic reticulum | 55.77 | 61.12 |
| Solyc09g011880.2.1 | Tomato | nucleus | 54.91 | 59.63 |
| PGSC0003DMT400052379 | Potato | cytosol | 54.7 | 59.12 |
| CDX91423 | Canola | cytosol | 51.07 | 57.59 |
| Bra005144.1-P | Field mustard | cytosol | 50.64 | 57.52 |
| CDX74919 | Canola | cytosol | 50.21 | 56.9 |
| AT2G38000.1 | Thale cress | cytosol | 50.64 | 56.56 |
Protein Annotations
| EMBL:AK101705 | EnsemblPlants:Os05t0316200-01 | EnsemblPlantsGene:Os05g0316200 | EntrezGene:4338392 | PANTHER:PTHR15852 | PANTHER:PTHR15852:SF20 |
| ProteinID:AAV44016.1 | ProteinID:BAF17088.1 | ProteinID:BAS93325.1 | RefSeq:XP_015640579.1 | SEG:seg | UniParc:UPI00004548C0 |
| UniProt:Q5W6X4 | MapMan:35.2 | : | : | : | : |
Description
Similar to mRNA, clone: RTFL01-30-M01. (Os05t0316200-01);Similar to mRNA, clone: RTFL01-30-M01. (Os05t0316200-02);Hypothetical conserved gene. (Os05t0316200-03)
Coordinates
chr5:+:14614333..14619933
Molecular Weight (calculated)
51125.5 Da
IEP (calculated)
7.209
GRAVY (calculated)
-0.359
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMEAERDGE EQRRPLLSSS SPPPPSPAAE HQHQHQQQYQ YLGRSSSSAL RGGGGGGGGG AGWGVGPEVS AAEVRSAASI SSASYYPPPP ALHHDVYPPD
101: IHSPSPSPAA PTAPHPHGGL AIVPQGPYPY GGEYQPSHDG RRDVLDEVEI RQLLIDHVGH RCCWGSRPAR TWKITSIEDC NVYVGTLETF IEERDTVTNK
201: EPYDGGKIDG RDKGPVLAVW ELDLRSEFPL LFVPEKEVMV KIPHSEVIEK CLDCESRGEI PCPICNAGQE HGFYKANQMT RCSACHGRGL LAHQDGSDTV
301: CGMCSGKGML PCIACGSRGL VTCKTCSGYG SLLAKSTAHV RWKTLSARKV SATRGAASVP DEVFHRAQGI QLCNIQAYQC TPAFFADSYQ LNQFSSEVVA
401: SRLPVPPSAR VISERHIISV VPVIRVTMAH RKQCFSFYVV GYNRDVFIRD YPSKFCWGLC CCFEWLRN
101: IHSPSPSPAA PTAPHPHGGL AIVPQGPYPY GGEYQPSHDG RRDVLDEVEI RQLLIDHVGH RCCWGSRPAR TWKITSIEDC NVYVGTLETF IEERDTVTNK
201: EPYDGGKIDG RDKGPVLAVW ELDLRSEFPL LFVPEKEVMV KIPHSEVIEK CLDCESRGEI PCPICNAGQE HGFYKANQMT RCSACHGRGL LAHQDGSDTV
301: CGMCSGKGML PCIACGSRGL VTCKTCSGYG SLLAKSTAHV RWKTLSARKV SATRGAASVP DEVFHRAQGI QLCNIQAYQC TPAFFADSYQ LNQFSSEVVA
401: SRLPVPPSAR VISERHIISV VPVIRVTMAH RKQCFSFYVV GYNRDVFIRD YPSKFCWGLC CCFEWLRN
001: MDKPLLSGSE KTNESERLDS YQYLQRNSSS ARNPSFAGAG VVTVEEIRTA SAVSSDPPSL YPPVIKTPVS LPIPQAIGYP SASGAGHELQ QRQFLDEIEI
101: RELLIDHIGH RCCWGSRPAR TWKIHAVEDC NVYVGTLDTF IEEREALTQT VPFTGGEFNG KKHGSEPGLW ELDLRPQFPT LFVPYKETQV LVPNSETVEK
201: CTGCTGRGDV VCPTCNADGE PGFYKENQMM KCSTCYGRGL VAHKDGSDTI CTNCNGKGKL PCPTCQSRGL IKCQTCDSTG SLLTSSIAVV KWKTLSKRKV
301: SATRGAGSVP EEVFDRAEGV QLCNTQAYQC TPAYFADSYF LNRFSSEVIS LRAEVPPTAN VVCERHTISV VPVTRVTMED RGKAFSFYII GFGKEIYLKD
401: YYPARFCWGL CPCLEWLKV
101: RELLIDHIGH RCCWGSRPAR TWKIHAVEDC NVYVGTLDTF IEEREALTQT VPFTGGEFNG KKHGSEPGLW ELDLRPQFPT LFVPYKETQV LVPNSETVEK
201: CTGCTGRGDV VCPTCNADGE PGFYKENQMM KCSTCYGRGL VAHKDGSDTI CTNCNGKGKL PCPTCQSRGL IKCQTCDSTG SLLTSSIAVV KWKTLSKRKV
301: SATRGAGSVP EEVFDRAEGV QLCNTQAYQC TPAYFADSYF LNRFSSEVIS LRAEVPPTAN VVCERHTISV VPVTRVTMED RGKAFSFYII GFGKEIYLKD
401: YYPARFCWGL CPCLEWLKV
Arabidopsis Description
Chaperone protein dnaJ-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SH87]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.