Factsheet for PGSC0003DMT400052379

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011880.2.1	Tomato	nucleus	96.77	97.22
KRH49254	Soybean	endoplasmic reticulum	71.82	72.83
VIT_08s0007g01660.t01	Wine grape	cytosol	69.98	70.14
AT2G38000.1	Thale cress	cytosol	62.36	64.44
CDX91423	Canola	cytosol	61.43	64.1
CDX74919	Canola	cytosol	60.51	63.44
GSMUA_Achr6P14970_001	Banana	nucleus	63.28	63.28
Bra005144.1-P	Field mustard	cytosol	60.05	63.11
TraesCS2A01G136800.1	Wheat	nucleus	56.58	57.51
TraesCS2B01G160700.1	Wheat	nucleus	59.35	55.63
TraesCS2D01G139500.1	Wheat	nucleus	59.58	55.36
HORVU2Hr1G024150.5	Barley	nucleus	59.35	55.27
OQU83401	Sorghum	nucleus	58.43	55.12
Os05t0316200-01	Rice	cytosol, nucleus, plastid	59.12	54.7
TraesCS2D01G139400.1	Wheat	nucleus	56.58	53.61
TraesCS2B01G160600.1	Wheat	nucleus	55.43	52.98
TraesCS2A01G136700.1	Wheat	nucleus	54.27	51.76
HORVU2Hr1G024160.1	Barley	cytosol	52.19	49.89
Zm00001d049192_P002	Maize	extracellular	25.64	44.4

Protein Annotations

EnsemblPlants:PGSC0003DMT400052379	EnsemblPlantsGene:PGSC0003DMG400020333	EntrezGene:102587461	PANTHER:PTHR15852	PANTHER:PTHR15852:SF20	PGSC:PGSC0003DMG400020333
RefSeq:XP_006363083.1	SEG:seg	UniParc:UPI000295727E	UniProt:M1BTA3	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020333]

Coordinates

chr9:+:678873..683952

Molecular Weight (calculated)

47976.7 Da

IEP (calculated)

7.259

GRAVY (calculated)

-0.410

Length

433 amino acids

Sequence
(BLAST)

001: MEQPLLIGEV ASKTGQRGSG KWGSYEYVGR AGSVIPTTSL AGSEVSVDEI RSAASMSVPY SPSLHAPLIS SPQSQSQSQP QFYEQGIVYQ GGYYGDASGT
101: TGDLRRQVLD EVEVRELLID HVGHRCCWGS RPARTWKIHA IEDCNVYVGT LETFTEERDT VVEKELYSGG SIEGKDKGPE TGIWELDLRS EFPVLFVPYK
201: ESRLRIPHSE TIEKCSGCDG RGNTVCPTCN ADQDSGFYKE GQMTQCTTCY GRGLIAHKDG SDTICLNCKG NGKLPCATCE SRGLIKCQTC QGGGSLLTRK
301: VAVVRWRTRS TRKVNATSGA ASVPDDVFHR AKGVQLCNNQ AYQCTPAYFA DSYFLNKFSS EVIAERPSIP TTARMICERH TISVVPVTRV TMTDRNRSFS
401: FYIIGNDREV YMKDYYPSRF CWGLCPCLEW LKL

Best Arabidopsis Sequence Match ( AT2G38000.1 )
(BLAST)

001: MDKPLLSGSE KTNESERLDS YQYLQRNSSS ARNPSFAGAG VVTVEEIRTA SAVSSDPPSL YPPVIKTPVS LPIPQAIGYP SASGAGHELQ QRQFLDEIEI
101: RELLIDHIGH RCCWGSRPAR TWKIHAVEDC NVYVGTLDTF IEEREALTQT VPFTGGEFNG KKHGSEPGLW ELDLRPQFPT LFVPYKETQV LVPNSETVEK
201: CTGCTGRGDV VCPTCNADGE PGFYKENQMM KCSTCYGRGL VAHKDGSDTI CTNCNGKGKL PCPTCQSRGL IKCQTCDSTG SLLTSSIAVV KWKTLSKRKV
301: SATRGAGSVP EEVFDRAEGV QLCNTQAYQC TPAYFADSYF LNRFSSEVIS LRAEVPPTAN VVCERHTISV VPVTRVTMED RGKAFSFYII GFGKEIYLKD
401: YYPARFCWGL CPCLEWLKV

Arabidopsis Description

Chaperone protein dnaJ-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SH87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.