CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28873	Soybean	endoplasmic reticulum	81.18	67.71
AT5G66040.1	Thale cress	cytosol	39.25	60.83
CDY18582	Canola	cytosol	39.25	58.87
CDX81421	Canola	cytosol	38.71	58.06
Bra037191.1-P	Field mustard	cytosol	37.63	56.45
CDX69162	Canola	plastid	45.16	55.63
VIT_00s0684g00030.t01	Wine grape	plastid	52.69	54.14
Os06t0725000-01	Rice	cytosol	40.32	52.08
Solyc02g083280.2.1	Tomato	plastid	51.61	51.61
GSMUA_Achr11P...	Banana	mitochondrion	44.09	51.57
PGSC0003DMT400009432	Potato	plastid	51.08	51.08
TraesCS7A01G545200.1	Wheat	cytosol	37.1	48.94
GSMUA_Achr8P34150_001	Banana	plastid	47.31	48.09
CDX75524	Canola	plastid	45.16	46.15
Bra011636.1-P	Field mustard	plastid	44.62	45.6
AT4G35770.1	Thale cress	plastid	44.09	45.05
GSMUA_Achr11P...	Banana	cytosol	31.72	44.36
Zm00001d014816_P001	Maize	plastid	43.01	41.88
TraesCS7D01G531400.1	Wheat	plastid	41.4	41.62
TraesCS7A01G545100.1	Wheat	plastid	41.4	41.62
TraesCS7B01G414600.1	Wheat	plastid	40.86	41.08
TraesCS7B01G467800.2	Wheat	plastid	40.86	40.86
TraesCS7D01G531600.1	Wheat	plastid	42.47	40.72
EER90413	Sorghum	mitochondrion	40.32	40.54
EER90414	Sorghum	plastid	43.55	39.13
TraesCSU01G099000.1	Wheat	plastid	34.95	38.92
TraesCS7D01G531800.1	Wheat	plastid	38.71	37.7
TraesCS7B01G019600.1	Wheat	plastid	39.78	37.56
KRH08053	Soybean	cytosol	27.96	33.12
KRH28807	Soybean	endoplasmic reticulum	26.34	32.89
TraesCSU01G225200.1	Wheat	plastid	29.57	32.35
KRH69767	Soybean	cytosol	27.42	32.28
KRH76647	Soybean	endoplasmic reticulum	25.81	32.21
HORVU0Hr1G022690.3	Barley	cytosol	39.25	31.33
HORVU0Hr1G022680.1	Barley	plastid	39.25	30.8
KRH24034	Soybean	cytosol	23.66	30.34
TraesCS7B01G468400.1	Wheat	mitochondrion	35.48	25.38
TraesCS7B01G468600.1	Wheat	mitochondrion	35.48	25.38

Protein Annotations

EMBL:ACUP02000626	EMBL:BT089836	EnsemblPlants:KRH76577	EnsemblPlantsGene:GLYMA_01G161500	EntrezGene:100305968	Gene3D:3.40.250.10
InterPro:IPR001763	InterPro:IPR036873	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR45431	PFAM:PF00581
PFscan:PS50206	ProteinID:KRH76577	ProteinID:KRH76577.1	SMART:SM00450	SUPFAM:SSF52821	UniParc:UPI0001B152BD
UniProt:C6SXE2	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:49955892..49958493

Molecular Weight (calculated)

20256.4 Da

IEP (calculated)

8.643

GRAVY (calculated)

-0.122

Length

186 amino acids

Sequence
(BLAST)

001: MKLMTATTTF DVSATCFRAP PPSCSMNPCH TSFSVINSLN PHKGRRISVA VPPKFPNFRR EASLQGNLEA IRVPTSVPVR VAYELLLAGH RYLDVRTPEE
101: FDAGHAPGAI NIPYMFRVGS GMTKNSNFIR EVSSQFRKDD EIIVGCELGK RSMMAASDLL AAGFTGLTDM AGGYAAWTQN GLPTEL

Best Arabidopsis Sequence Match ( AT4G35770.1 )
(BLAST)

001: METTAFNTTS RIGNWSSAIS PPLQTCGSFK CQLPTRRGVI VADLRNSNFR WRKATTTSRG NVAAEAVKIP TSVPVRVARE LAQAGYRYLD VRTPDEFSIG
101: HPTRAINVPY MYRVGSGMVK NPSFLRQVSS HFRKHDEIII GCESGQMSFM ASTDLLTAGF TAITDIAGGY VAWTENELPV EE

Arabidopsis Description

STR15SEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYD5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.