CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28807	Soybean	endoplasmic reticulum	90.6	90.6
VIT_04s0023g03600.t01	Wine grape	cytosol	53.69	60.15
PGSC0003DMT400009210	Potato	endoplasmic reticulum	56.38	60.0
Solyc02g083730.2.1	Tomato	cytosol	51.68	59.69
KRH08053	Soybean	cytosol	60.4	57.32
KRH69767	Soybean	cytosol	58.39	55.06
GSMUA_Achr5P18880_001	Banana	endoplasmic reticulum	49.66	52.86
CDY57763	Canola	cytosol	44.3	50.0
CDY45212	Canola	cytosol	41.61	49.21
CDY30783	Canola	cytosol	41.61	49.21
Bra031805.1-P	Field mustard	cytosol	42.95	48.48
CDY45211	Canola	cytosol	41.61	47.69
Bra012056.1-P	Field mustard	cytosol	41.61	47.69
GSMUA_Achr8P19470_001	Banana	mitochondrion	26.85	46.51
VIT_04s0023g03590.t01	Wine grape	cytosol	48.99	45.91
CDY55100	Canola	cytosol	36.24	45.76
AT5G66170.2	Thale cress	cytosol	41.61	44.93
KRH24034	Soybean	cytosol	41.61	42.76
CDY29204	Canola	endoplasmic reticulum, extracellular, vacuole	42.95	41.83
CDY07813	Canola	endoplasmic reticulum	42.28	41.18
AT2G17850.3	Thale cress	endoplasmic reticulum	48.32	38.3
KRH76577	Soybean	nucleus	32.21	25.81
KRH28873	Soybean	endoplasmic reticulum	33.56	22.42

Protein Annotations

EMBL:ACUP02000632	EnsemblPlants:KRH76647	EnsemblPlantsGene:GLYMA_01G165300	EntrezGene:100815122	Gene3D:3.40.250.10	InterPro:IPR001763
InterPro:IPR036873	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR44542	PANTHER:PTHR44542:SF2	PFAM:PF00581
PFscan:PS50206	ProteinID:KRH76647	ProteinID:KRH76647.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM00450
SUPFAM:SSF52821	TMHMM:TMhelix	UniParc:UPI0002336B8A	UniProt:I1J8K5	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:-:50276148..50278029

Molecular Weight (calculated)

16428.2 Da

IEP (calculated)

8.826

GRAVY (calculated)

0.223

Length

149 amino acids

Sequence
(BLAST)

001: MAVTVAMLPR WSVFLLFLFV LCSSGAKVVA IDVHAAKRLI QTGSIYLDVR TVEEFKKGHV DAVNVLNIPY MLNTPKGKVK NPDFLKEVSS ACNKEDHLIL
101: GCQSGVRSLY ATADLLSEGF KNVKDMGGGY VDWVKNKFPV IIPVAKEEL

Best Arabidopsis Sequence Match ( AT2G17850.1 )
(BLAST)

001: MDSLHVLRSF LLLFIVFNHL PRTTTSMSEP KVITIDVNQA QKLLDSGYTF LDVRTVEEFK KGHVDSENVF NVPYWLYTPQ GQEINPNFLK HVSSLCNQTD
101: HLILGCKSGV RSLHATKFLV SSGFKTVRNM DGGYIAWVNK RFPVKVEHKE LKYDEL

Arabidopsis Description

Rhodanese/Cell cycle control phosphatase superfamily protein [Source:TAIR;Acc:AT2G17850]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.