Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g083730.2.1 | Tomato | cytosol | 81.43 | 88.37 |
| VIT_04s0023g03600.t01 | Wine grape | cytosol | 60.0 | 63.16 |
| GSMUA_Achr5P18880_001 | Banana | endoplasmic reticulum | 61.43 | 61.43 |
| KRH76647 | Soybean | endoplasmic reticulum | 60.0 | 56.38 |
| CDY30783 | Canola | cytosol | 50.0 | 55.56 |
| CDY45212 | Canola | cytosol | 50.0 | 55.56 |
| KRH28807 | Soybean | endoplasmic reticulum | 58.57 | 55.03 |
| CDY45211 | Canola | cytosol | 50.0 | 53.85 |
| Bra012056.1-P | Field mustard | cytosol | 50.0 | 53.85 |
| CDY57763 | Canola | cytosol | 50.0 | 53.03 |
| Bra031805.1-P | Field mustard | cytosol | 50.0 | 53.03 |
| KRH08053 | Soybean | cytosol | 59.29 | 52.87 |
| KRH69767 | Soybean | cytosol | 58.57 | 51.9 |
| CDY55100 | Canola | cytosol | 42.14 | 50.0 |
| AT5G66170.2 | Thale cress | cytosol | 48.57 | 49.28 |
| VIT_04s0023g03590.t01 | Wine grape | cytosol | 55.0 | 48.43 |
| GSMUA_Achr8P19470_001 | Banana | mitochondrion | 29.29 | 47.67 |
| CDY29204 | Canola | endoplasmic reticulum, extracellular, vacuole | 43.57 | 39.87 |
| CDY07813 | Canola | endoplasmic reticulum | 43.57 | 39.87 |
| AT2G17850.3 | Thale cress | endoplasmic reticulum | 44.29 | 32.98 |
| PGSC0003DMT400009432 | Potato | plastid | 37.86 | 28.49 |
| PGSC0003DMT400069454 | Potato | cytosol | 36.43 | 20.08 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400009210 | EnsemblPlantsGene:PGSC0003DMG400003573 | EntrezGene:102594050 | Gene3D:3.40.250.10 | InterPro:IPR001763 | InterPro:IPR036873 |
| InterPro:Rhodanese-like_dom | InterPro:Rhodanese-like_dom_sf | PANTHER:PTHR44542 | PANTHER:PTHR44542:SF3 | PFAM:PF00581 | PFscan:PS50206 |
| PGSC:PGSC0003DMG400003573 | RefSeq:XP_006340747.1 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00450 | SUPFAM:SSF52821 |
| TMHMM:TMhelix | UniParc:UPI000295AC81 | UniProt:M0ZVS2 | MapMan:35.1 | : | : |
Description
Senescence-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003573]
Coordinates
chr2:-:39249890..39251380
Molecular Weight (calculated)
15587.7 Da
IEP (calculated)
7.055
GRAVY (calculated)
-0.128
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNGIISLLF VVLLLFYSSG AEVVTVDVHA ARQLIQSGHR YLDVRTEEEF KKGHVHNSLN IPYMFNTPRG RVKNPKFIEQ VSSACDKEEK LIVGCQSGVR
101: SLYATTDLLN ADFKHVSNMG GGYLAWVENG FAVNKPQDEL
101: SLYATTDLLN ADFKHVSNMG GGYLAWVENG FAVNKPQDEL
001: MSQSISSSTK AEEVVSVDVS QAKTLLQSGH QYLDVRTQDE FRRGHCEAAK IVNIPYMLNT PQGRVKNQEF LEQVSSLLNP ADDILVGCQS GARSLKATTE
101: LVAAGYKKVR NVGGGYLAWV DHSFPINTEE EEPSAN
101: LVAAGYKKVR NVGGGYLAWV DHSFPINTEE EEPSAN
Arabidopsis Description
STR18Sulfurtransferase 18 [Source:UniProtKB/TrEMBL;Acc:F4JZ39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.