Factsheet for PGSC0003DMT400009432

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g083280.2.1	Tomato	plastid	94.09	94.09
AT5G66040.1	Thale cress	cytosol	39.78	61.67
CDY18582	Canola	cytosol	40.86	61.29
CDX81421	Canola	cytosol	40.32	60.48
Bra037191.1-P	Field mustard	cytosol	39.78	59.68
TraesCS7A01G545200.1	Wheat	cytosol	41.4	54.61
CDX69162	Canola	plastid	44.09	54.3
Os06t0725000-01	Rice	cytosol	41.4	53.47
VIT_00s0684g00030.t01	Wine grape	plastid	51.08	52.49
GSMUA_Achr11P...	Banana	mitochondrion	44.09	51.57
KRH76577	Soybean	nucleus	51.08	51.08
Zm00001d014816_P001	Maize	plastid	47.85	46.6
GSMUA_Achr8P34150_001	Banana	plastid	45.16	45.9
Bra011636.1-P	Field mustard	plastid	43.55	44.51
CDX75524	Canola	plastid	43.01	43.96
TraesCS7D01G531800.1	Wheat	plastid	44.09	42.93
GSMUA_Achr11P...	Banana	cytosol	30.65	42.86
TraesCS7D01G531600.1	Wheat	plastid	44.09	42.27
EER90413	Sorghum	mitochondrion	41.94	42.16
KRH28873	Soybean	endoplasmic reticulum	50.54	42.15
TraesCS7B01G019600.1	Wheat	plastid	44.62	42.13
AT4G35770.1	Thale cress	plastid	40.86	41.76
TraesCS7A01G545100.1	Wheat	plastid	41.4	41.62
TraesCS7D01G531400.1	Wheat	plastid	41.4	41.62
TraesCS7B01G414600.1	Wheat	plastid	41.4	41.62
TraesCS7B01G467800.2	Wheat	plastid	40.86	40.86
EER90414	Sorghum	plastid	45.16	40.58
PGSC0003DMT400009210	Potato	endoplasmic reticulum	28.49	37.86
TraesCSU01G099000.1	Wheat	plastid	33.87	37.72
HORVU0Hr1G022690.3	Barley	cytosol	46.24	36.91
TraesCSU01G225200.1	Wheat	plastid	30.65	33.53
HORVU0Hr1G022680.1	Barley	plastid	41.4	32.49
TraesCS7B01G468400.1	Wheat	mitochondrion	39.25	28.08
TraesCS7B01G468600.1	Wheat	mitochondrion	39.25	28.08
PGSC0003DMT400069454	Potato	cytosol	24.73	18.11

Protein Annotations

EnsemblPlants:PGSC0003DMT400009432	EnsemblPlantsGene:PGSC0003DMG400003666	EntrezGene:102580341	Gene3D:3.40.250.10	InterPro:IPR001763	InterPro:IPR036873
InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR45431	PFAM:PF00581	PFscan:PS50206	PGSC:PGSC0003DMG400003666
RefSeq:XP_006340792.1	SMART:SM00450	SUPFAM:SSF52821	UniParc:UPI00029556B6	UniProt:M0ZW90	MapMan:35.1

Description

Senescence-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003666]

Coordinates

chr2:+:38911584..38914719

Molecular Weight (calculated)

20291.3 Da

IEP (calculated)

7.772

GRAVY (calculated)

-0.145

Length

186 amino acids

Sequence
(BLAST)

001: MRTISLHSTS FSLLEFHGTK NLAHSRINGS VSLIPMARPQ FQPKKRRDIG TSNRNPSFSW MATVGEKVQN STVPTSVPVR VALELLQAGH RYLDVRTAEE
101: FSDGHAAGAI NIPYMLRIGS GMIKNPNFLE EVLEHFGKDD EIIVGCQLGK RSFMAATELL AAGFTGVTDI AGGYATWTES GLPIES

Best Arabidopsis Sequence Match ( AT4G35770.1 )
(BLAST)

001: METTAFNTTS RIGNWSSAIS PPLQTCGSFK CQLPTRRGVI VADLRNSNFR WRKATTTSRG NVAAEAVKIP TSVPVRVARE LAQAGYRYLD VRTPDEFSIG
101: HPTRAINVPY MYRVGSGMVK NPSFLRQVSS HFRKHDEIII GCESGQMSFM ASTDLLTAGF TAITDIAGGY VAWTENELPV EE

Arabidopsis Description

STR15SEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYD5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.