Factsheet for Zm00001d014816_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0725000-01	Rice	cytosol	54.45	72.22
TraesCS7A01G545200.1	Wheat	cytosol	50.79	68.79
CDX81421	Canola	cytosol	38.74	59.68
CDY18582	Canola	cytosol	38.74	59.68
EER90414	Sorghum	plastid	63.87	58.94
AT5G66040.1	Thale cress	cytosol	36.13	57.5
Bra037191.1-P	Field mustard	cytosol	36.65	56.45
TraesCS7D01G531600.1	Wheat	plastid	56.54	55.67
TraesCS7B01G019600.1	Wheat	plastid	56.02	54.31
TraesCS7D01G531800.1	Wheat	plastid	53.93	53.93
GSMUA_Achr11P...	Banana	mitochondrion	44.5	53.46
CDX69162	Canola	plastid	41.88	52.98
TraesCS7B01G414600.1	Wheat	plastid	50.79	52.43
TraesCS7B01G467800.2	Wheat	plastid	50.26	51.61
TraesCS7D01G531400.1	Wheat	plastid	48.69	50.27
TraesCS7A01G545100.1	Wheat	plastid	48.17	49.73
PGSC0003DMT400009432	Potato	plastid	46.6	47.85
VIT_00s0684g00030.t01	Wine grape	plastid	44.5	46.96
Solyc02g083280.2.1	Tomato	plastid	44.5	45.7
HORVU0Hr1G022690.3	Barley	cytosol	55.5	45.49
TraesCSU01G099000.1	Wheat	plastid	39.27	44.91
GSMUA_Achr11P...	Banana	cytosol	30.89	44.36
CDX75524	Canola	plastid	41.88	43.96
Bra011636.1-P	Field mustard	plastid	41.88	43.96
KRH76577	Soybean	nucleus	41.88	43.01
TraesCSU01G225200.1	Wheat	plastid	38.22	42.94
AT4G35770.1	Thale cress	plastid	39.79	41.76
HORVU0Hr1G022680.1	Barley	plastid	48.17	38.82
Zm00001d053862_P001	Maize	cytosol	23.56	36.0
KRH28873	Soybean	endoplasmic reticulum	41.36	35.43
TraesCS7B01G468400.1	Wheat	mitochondrion	48.17	35.38
TraesCS7B01G468600.1	Wheat	mitochondrion	48.17	35.38
Zm00001d025081_P002	Maize	endoplasmic reticulum	29.32	34.78
Zm00001d054093_P002	Maize	extracellular	22.51	31.62

Protein Annotations

EMBL:EU970581	EnsemblPlants:Zm00001d014816_P001	EnsemblPlants:Zm00001d014816_T001	EnsemblPlantsGene:Zm00001d014816	EntrezGene:107303345	Gene3D:3.40.250.10
InterPro:IPR001763	InterPro:IPR036873	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR45431	PFAM:PF00581
PFscan:PS50206	ProteinID:AQK67257.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM00450	SUPFAM:SSF52821
UniParc:UPI000182FA7B	UniProt:B6U016	MapMan:35.1	:	:	:

Description

Senescence-associated protein DIN1

Coordinates

chr5:-:64424633..64426235

Molecular Weight (calculated)

20023.8 Da

IEP (calculated)

8.507

GRAVY (calculated)

-0.129

Length

191 amino acids

Sequence
(BLAST)

001: MMATSASGVS LLLLLAHPAP PPHPANGASS LWRGGGAALA PHPARFAAKR RTLRLVNVSV SCSAEALRSD GAGAEPAVPR SVPVRVAYEL QQAGHRYLDV
101: RTEGEFSAGH PEGAVNIPYM NKTGSGMTKN AHFLEQVSRA FGKDDEIIVG CQSGKRSLMA ATELCSAGFT AVTDIAGGFS TWRENELPTV Q

Best Arabidopsis Sequence Match ( AT4G35770.1 )
(BLAST)

001: METTAFNTTS RIGNWSSAIS PPLQTCGSFK CQLPTRRGVI VADLRNSNFR WRKATTTSRG NVAAEAVKIP TSVPVRVARE LAQAGYRYLD VRTPDEFSIG
101: HPTRAINVPY MYRVGSGMVK NPSFLRQVSS HFRKHDEIII GCESGQMSFM ASTDLLTAGF TAITDIAGGY VAWTENELPV EE

Arabidopsis Description

STR15SEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYD5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.