Factsheet for Zm00001d054093_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	43.38	55.66
TraesCS6D01G008400.1	Wheat	cytosol	50.74	51.49
TraesCS6A01G005700.1	Wheat	cytosol	50.74	51.49
Os12t0428000-01	Rice	extracellular	52.94	51.43
Zm00001d053862_P001	Maize	cytosol	46.32	50.4
HORVU6Hr1G000090.2	Barley	cytosol	47.79	50.39
TraesCS6A01G005800.1	Wheat	cytosol	48.53	50.0
TraesCS6B01G011300.1	Wheat	cytosol	49.26	50.0
HORVU6Hr1G000130.1	Barley	cytosol	48.53	49.25
TraesCS6D01G008300.1	Wheat	cytosol	48.53	49.25
TraesCS6D01G008500.1	Wheat	cytosol	47.79	49.24
TraesCS6B01G011400.1	Wheat	cytosol	46.32	47.73
TraesCS6A01G005900.1	Wheat	cytosol	47.79	47.45
TraesCS6D01G008600.1	Wheat	cytosol	47.06	47.06
HORVU6Hr1G000070.1	Barley	cytosol	46.32	46.32
TraesCS6B01G011500.1	Wheat	cytosol	46.32	46.32
CDY49429	Canola	cytosol	32.35	31.21
CDY24335	Canola	cytosol	31.62	30.5
Bra002059.1-P	Field mustard	cytosol	31.62	30.5
Zm00001d025081_P002	Maize	endoplasmic reticulum	36.03	30.43
KRH24034	Soybean	cytosol	31.62	29.66
AT2G21045.1	Thale cress	mitochondrion	30.88	24.85
Zm00001d014816_P001	Maize	plastid	31.62	22.51
PGSC0003DMT400069454	Potato	cytosol	25.74	13.78

Protein Annotations

EMBL:EU958300	EnsemblPlants:Zm00001d054093_P002	EnsemblPlants:Zm00001d054093_T002	EnsemblPlantsGene:Zm00001d054093	EntrezGene:100281897	Gene3D:3.40.250.10
InterPro:IPR001763	InterPro:IPR036873	InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR44542	PANTHER:PTHR44542:SF5
PFAM:PF00581	PFscan:PS50206	ProteinID:AQK61264.1	SUPFAM:SSF52821	UniParc:UPI000182D092	UniProt:B6SZY5
MapMan:35.1	:	:	:	:	:

Description

Senescence-associated protein DIN1

Coordinates

chr4:-:246371114..246375126

Molecular Weight (calculated)

15405.4 Da

IEP (calculated)

7.996

GRAVY (calculated)

-0.070

Length

136 amino acids

Sequence
(BLAST)

001: MAACVPTVDA EEACALLSSS THHYLDVRMW EDFDKGHVAG ARNVPYYLSV TPHGKEKNPQ FVEQVSALYA KDQNLIVGCR SGIRSKLATA DLVNAVIYAI
101: SHWLRTWAVL RLLVQVVKDF YFQAYGWRPS HRIDCH

Best Arabidopsis Sequence Match ( AT5G66170.1 )
(BLAST)

001: MSQSISSSTK AEEVVSVDVS QAKTLLQSGH QYLDVRTQDE FRRGHCEAAK IVNIPYMLNT PQGRVKNQEF LEQVSSLLNP ADDILVGCQS GARSLKATTE
101: LVAAVRLQES EKRGRWLLGL GGSQLSHQHG GGGAIC

Arabidopsis Description

STR18Sulfurtransferase 18 [Source:UniProtKB/TrEMBL;Acc:F4JZ39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.