Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G008500.1 | Wheat | cytosol | 98.48 | 98.48 |
| TraesCS6B01G011400.1 | Wheat | cytosol | 92.42 | 92.42 |
| HORVU6Hr1G000090.2 | Barley | cytosol | 88.64 | 90.7 |
| TraesCS6A01G005700.1 | Wheat | cytosol | 81.06 | 79.85 |
| TraesCS6A01G005900.1 | Wheat | cytosol | 78.79 | 75.91 |
| Os12t0428000-01 | Rice | extracellular | 61.36 | 57.86 |
| TraesCS6A01G129500.1 | Wheat | cytosol | 50.76 | 49.63 |
| GSMUA_Achr11P... | Banana | cytosol | 39.39 | 49.06 |
| Zm00001d054093_P002 | Maize | extracellular | 50.0 | 48.53 |
| KRH24034 | Soybean | cytosol | 39.39 | 35.86 |
| CDY24335 | Canola | cytosol | 37.88 | 35.46 |
| Bra002059.1-P | Field mustard | cytosol | 37.88 | 35.46 |
| CDY49429 | Canola | cytosol | 37.12 | 34.75 |
| TraesCS7A01G545200.1 | Wheat | cytosol | 30.3 | 28.37 |
| AT2G21045.1 | Thale cress | mitochondrion | 34.09 | 26.63 |
| TraesCS6A01G106000.3 | Wheat | cytosol, plastid | 39.39 | 25.0 |
| TraesCS7A01G151200.1 | Wheat | cytosol | 38.64 | 24.06 |
| TraesCS7A01G545100.1 | Wheat | plastid | 31.82 | 22.7 |
| PGSC0003DMT400069454 | Potato | cytosol | 26.52 | 13.78 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G005800.1 | EnsemblPlantsGene:TraesCS6A01G005800 | Gene3D:3.40.250.10 | InterPro:IPR001763 | InterPro:IPR036873 | InterPro:Rhodanese-like_dom |
| InterPro:Rhodanese-like_dom_sf | PANTHER:PTHR44542 | PANTHER:PTHR44542:SF5 | PFAM:PF00581 | PFscan:PS50206 | SEG:seg |
| SMART:SM00450 | SUPFAM:SSF52821 | TIGR:cd00158 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr6A:-:2233924..2234419
Molecular Weight (calculated)
14206.6 Da
IEP (calculated)
6.941
GRAVY (calculated)
-0.277
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLRSSTSA AVESVDAEAA CGLLASEQYG YVDVRMWEDF EKGHVAGARN VPYYLSVTPH GKERNPDFVD QVAALHSKED RFLVGCRSGV RSRLATADLV
101: AAGFANVKNL QGGYLSLLKS TSYPQPQAAS HQ
101: AAGFANVKNL QGGYLSLLKS TSYPQPQAAS HQ
001: MDSLHVLRSF LLLFIVFNHL PRTTTSMSEP KVITIDVNQA QKLLDSGYTF LDVRLILKPF RFSHAFIVVR YYCLVISEIL RAVKHRTVEE FKKGHVDSEN
101: VFNVPYWLYT PQGQEINPNF LKHVSSLCNQ TDHLILGCKS GVRSLHATKF LVSSGFKTVR NMDGGYIAWV NKRFPVKVEH KELKYDEL
101: VFNVPYWLYT PQGQEINPNF LKHVSSLCNQ TDHLILGCKS GVRSLHATKF LVSSGFKTVR NMDGGYIAWV NKRFPVKVEH KELKYDEL
Arabidopsis Description
Rhodanese/Cell cycle control phosphatase superfamily protein [Source:TAIR;Acc:AT2G17850]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.