CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75524	Canola	plastid	83.44	69.23
CDX81421	Canola	cytosol	49.67	60.48
CDY18582	Canola	cytosol	49.67	60.48
AT4G35770.1	Thale cress	plastid	69.54	57.69
Os06t0725000-01	Rice	cytosol	50.99	53.47
TraesCS7A01G545200.1	Wheat	cytosol	48.34	51.77
VIT_00s0684g00030.t01	Wine grape	plastid	57.62	48.07
GSMUA_Achr11P...	Banana	mitochondrion	49.67	47.17
KRH76577	Soybean	nucleus	55.63	45.16
GSMUA_Achr8P34150_001	Banana	plastid	54.3	44.81
PGSC0003DMT400009432	Potato	plastid	54.3	44.09
Solyc02g083280.2.1	Tomato	plastid	52.98	43.01
TraesCS7D01G531400.1	Wheat	plastid	52.32	42.7
TraesCS7B01G414600.1	Wheat	plastid	51.66	42.16
TraesCS7A01G545100.1	Wheat	plastid	51.66	42.16
EER90413	Sorghum	mitochondrion	51.66	42.16
Zm00001d014816_P001	Maize	plastid	52.98	41.88
GSMUA_Achr11P...	Banana	cytosol	36.42	41.35
TraesCS7B01G467800.2	Wheat	plastid	50.33	40.86
TraesCS7D01G531800.1	Wheat	plastid	50.99	40.31
TraesCS7D01G531600.1	Wheat	plastid	50.99	39.69
CDY45212	Canola	cytosol	33.11	39.68
CDY30783	Canola	cytosol	33.11	39.68
CDY55100	Canola	cytosol	30.46	38.98
CDY45211	Canola	cytosol	33.11	38.46
TraesCSU01G099000.1	Wheat	plastid	42.38	38.32
EER90414	Sorghum	plastid	52.32	38.16
TraesCS7B01G019600.1	Wheat	plastid	49.67	38.07
CDY57763	Canola	cytosol	33.11	37.88
KRH28873	Soybean	endoplasmic reticulum	55.63	37.67
CDY49429	Canola	cytosol	31.13	33.33
CDY24335	Canola	cytosol	30.46	32.62
HORVU0Hr1G022690.3	Barley	cytosol	50.33	32.62
TraesCSU01G225200.1	Wheat	plastid	35.76	31.76
HORVU0Hr1G022680.1	Barley	plastid	49.67	31.65
CDY29204	Canola	endoplasmic reticulum, extracellular, vacuole	30.46	30.07
CDY07813	Canola	endoplasmic reticulum	30.46	30.07
TraesCS7B01G468600.1	Wheat	mitochondrion	45.03	26.15
TraesCS7B01G468400.1	Wheat	mitochondrion	45.03	26.15

Protein Annotations

EnsemblPlants:CDX69162	EnsemblPlantsGene:GSBRNA2T00130950001	Gene3D:3.40.250.10	InterPro:IPR001763	InterPro:IPR036873	InterPro:Rhodanese-like_dom
InterPro:Rhodanese-like_dom_sf	PANTHER:PTHR45431	PFAM:PF00581	PFscan:PS50206	ProteinID:CDX69162	ProteinID:CDX69162.1
SEG:seg	SMART:SM00450	SUPFAM:SSF52821	UniParc:UPI0004EE55FF	MapMan:35.1	:

Description

BnaC01g02910D

Coordinates

chrLK031789:+:3223217..3224334

Molecular Weight (calculated)

16580.8 Da

IEP (calculated)

9.206

GRAVY (calculated)

-0.313

Length

151 amino acids

Sequence
(BLAST)

001: MESALNTTTR IGSCRRRRCR SRKVTTGRAN IAAEAARVPT SVPVRVAREL AQAGYKYLDV RTPDEFSIGH PSSAINVPYM YRVGSGMIKN PSFLKQVSSH
101: FRKHDEIIIG CESGERSLMA STELLTAGFT GVTDIAGGYV AWTENELPVE E

Best Arabidopsis Sequence Match ( AT4G35770.1 )
(BLAST)

001: METTAFNTTS RIGNWSSAIS PPLQTCGSFK CQLPTRRGVI VADLRNSNFR WRKATTTSRG NVAAEAVKIP TSVPVRVARE LAQAGYRYLD VRTPDEFSIG
101: HPTRAINVPY MYRVGSGMVK NPSFLRQVSS HFRKHDEIII GCESGQMSFM ASTDLLTAGF TAITDIAGGY VAWTENELPV EE

Arabidopsis Description

STR15SEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYD5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.