Factsheet for VIT_00s0684g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G66040.1	Thale cress	cytosol	44.2	66.67
CDY18582	Canola	cytosol	44.2	64.52
Bra037191.1-P	Field mustard	cytosol	43.65	63.71
CDX81421	Canola	cytosol	43.65	63.71
CDX69162	Canola	plastid	48.07	57.62
Os06t0725000-01	Rice	cytosol	42.54	53.47
KRH76577	Soybean	nucleus	54.14	52.69
TraesCS7A01G545200.1	Wheat	cytosol	40.33	51.77
PGSC0003DMT400009432	Potato	plastid	52.49	51.08
Solyc02g083280.2.1	Tomato	plastid	51.38	50.0
GSMUA_Achr11P...	Banana	mitochondrion	43.65	49.69
Bra011636.1-P	Field mustard	plastid	48.62	48.35
CDX75524	Canola	plastid	48.62	48.35
GSMUA_Achr8P34150_001	Banana	plastid	46.96	46.45
AT4G35770.1	Thale cress	plastid	45.86	45.6
Zm00001d014816_P001	Maize	plastid	46.96	44.5
KRH28873	Soybean	endoplasmic reticulum	54.7	44.39
TraesCS7D01G531600.1	Wheat	plastid	46.41	43.3
VIT_04s0023g03600.t01	Wine grape	cytosol	30.39	41.35
TraesCS7A01G545100.1	Wheat	plastid	41.99	41.08
TraesCS7D01G531400.1	Wheat	plastid	41.99	41.08
TraesCS7B01G019600.1	Wheat	plastid	44.2	40.61
GSMUA_Achr11P...	Banana	cytosol	29.83	40.6
EER90414	Sorghum	plastid	46.41	40.58
EER90413	Sorghum	mitochondrion	41.44	40.54
TraesCS7B01G414600.1	Wheat	plastid	40.88	40.0
TraesCS7B01G467800.2	Wheat	plastid	40.33	39.25
TraesCS7D01G531800.1	Wheat	plastid	40.88	38.74
TraesCSU01G099000.1	Wheat	plastid	33.7	36.53
HORVU0Hr1G022690.3	Barley	cytosol	41.99	32.62
HORVU0Hr1G022680.1	Barley	plastid	42.54	32.49
TraesCSU01G225200.1	Wheat	plastid	30.39	32.35
VIT_04s0023g03590.t01	Wine grape	cytosol	28.18	32.08
TraesCS7B01G468600.1	Wheat	mitochondrion	39.23	27.31
TraesCS7B01G468400.1	Wheat	mitochondrion	39.23	27.31

Protein Annotations

EntrezGene:100259157	wikigene:100259157	Gene3D:3.40.250.10	MapMan:35.1	EMBL:AM479189	ProteinID:CAN72959
ProteinID:CAN72959.1	ProteinID:CCB59165	ProteinID:CCB59165.1	UniProt:F6HWV1	EMBL:FN596308	InterPro:IPR001763
InterPro:IPR036873	EntrezGene:LOC100259157	wikigene:LOC100259157	PFAM:PF00581	PFscan:PS50206	PANTHER:PTHR45431
InterPro:Rhodanese-like_dom	InterPro:Rhodanese-like_dom_sf	SMART:SM00450	SUPFAM:SSF52821	TIGR:TC54967	UniParc:UPI000210A1F6
ArrayExpress:VIT_00s0684g00030	EnsemblPlantsGene:VIT_00s0684g00030	EnsemblPlants:VIT_00s0684g00030.t01	RefSeq:XP_002271073	RefSeq:XP_002271073.2	RefSeq:XP_002271073.3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:34169552..34172479

Molecular Weight (calculated)

19472.5 Da

IEP (calculated)

9.566

GRAVY (calculated)

-0.038

Length

181 amino acids

Sequence
(BLAST)

001: MEKEMIAKSF ISSAAYAPSL LPLLSPSRNL NFRCLSPLKA NPQRCVVGGT KRFCRVVAAR GNLESTGVPT SVPVRVALEL LQAGHRYLDV RTPEEFSAGH
101: ASGAINVPYM LRFGSGMAKN PKFLVEVSSH FRKDDEIIVG CQKGKRSLMA VNDLLAAGFT AVTDIAGGYD AWSQNGLPTD S

Best Arabidopsis Sequence Match ( AT4G35770.1 )
(BLAST)

001: METTAFNTTS RIGNWSSAIS PPLQTCGSFK CQLPTRRGVI VADLRNSNFR WRKATTTSRG NVAAEAVKIP TSVPVRVARE LAQAGYRYLD VRTPDEFSIG
101: HPTRAINVPY MYRVGSGMVK NPSFLRQVSS HFRKHDEIII GCESGQMSFM ASTDLLTAGF TAITDIAGGY VAWTENELPV EE

Arabidopsis Description

STR15SEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYD5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.