Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0023g03600.t01 | Wine grape | cytosol | 66.67 | 79.7 |
| Solyc02g083730.2.1 | Tomato | cytosol | 47.17 | 58.14 |
| PGSC0003DMT400009210 | Potato | endoplasmic reticulum | 48.43 | 55.0 |
| GSMUA_Achr5P18880_001 | Banana | endoplasmic reticulum | 48.43 | 55.0 |
| KRH76647 | Soybean | endoplasmic reticulum | 45.91 | 48.99 |
| KRH28807 | Soybean | endoplasmic reticulum | 44.65 | 47.65 |
| KRH08053 | Soybean | cytosol | 46.54 | 47.13 |
| Bra012056.1-P | Field mustard | cytosol | 38.36 | 46.92 |
| CDY45211 | Canola | cytosol | 38.36 | 46.92 |
| CDY30783 | Canola | cytosol | 37.11 | 46.83 |
| CDY45212 | Canola | cytosol | 37.11 | 46.83 |
| GSMUA_Achr8P19470_001 | Banana | mitochondrion | 24.53 | 45.35 |
| KRH69767 | Soybean | cytosol | 44.65 | 44.94 |
| AT5G66170.2 | Thale cress | cytosol | 37.74 | 43.48 |
| CDY57763 | Canola | cytosol | 35.85 | 43.18 |
| Bra031805.1-P | Field mustard | cytosol | 35.85 | 43.18 |
| CDY55100 | Canola | cytosol | 29.56 | 39.83 |
| CDY29204 | Canola | endoplasmic reticulum, extracellular, vacuole | 37.74 | 39.22 |
| CDY07813 | Canola | endoplasmic reticulum | 37.11 | 38.56 |
| AT2G17850.3 | Thale cress | endoplasmic reticulum | 38.99 | 32.98 |
| VIT_00s0684g00030.t01 | Wine grape | plastid | 32.08 | 28.18 |
Protein Annotations
| ArrayExpress:VIT_04s0023g03590 | EMBL:FN594959 | EnsemblPlants:VIT_04s0023g03590.t01 | EnsemblPlantsGene:VIT_04s0023g03590 | Gene3D:3.40.250.10 | InterPro:IPR001763 |
| InterPro:IPR036873 | InterPro:Rhodanese-like_dom | InterPro:Rhodanese-like_dom_sf | PANTHER:PTHR44542 | PANTHER:PTHR44542:SF3 | PFAM:PF00581 |
| PFscan:PS50206 | ProteinID:CCB44354 | ProteinID:CCB44354.1 | SMART:SM00450 | SUPFAM:SSF52821 | UniParc:UPI0002108971 |
| UniProt:F6GWL9 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:20125857..20127356
Molecular Weight (calculated)
17642.0 Da
IEP (calculated)
4.744
GRAVY (calculated)
-0.139
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPSSATEV VTIDVHAAKE LTNSGYRYLD VRTVEEFKKG HADVENILNI PYLFTTPEER LKIPEFLEQV QSACSKEDHL VVVIFHLISG LNHNKYNLDE
101: FSEIVYLFSM NGCLGGVRSL AAASVLVNAG FKDVKDMGGG YEAWVETGLT VTKPKEEEK
101: FSEIVYLFSM NGCLGGVRSL AAASVLVNAG FKDVKDMGGG YEAWVETGLT VTKPKEEEK
001: MDSLHVLRSF LLLFIVFNHL PRTTTSMSEP KVITIDVNQA QKLLDSGYTF LDVRTVEEFK KGHVDSENVF NVPYWLYTPQ GQEINPNFLK HVSSLCNQTD
101: HLILGCKSGV RSLHATKFLV SSGFKTVRNM DGGYIAWVNK RFPVKVEHKE LKYDEL
101: HLILGCKSGV RSLHATKFLV SSGFKTVRNM DGGYIAWVNK RFPVKVEHKE LKYDEL
Arabidopsis Description
Rhodanese/Cell cycle control phosphatase superfamily protein [Source:TAIR;Acc:AT2G17850]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.