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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
 plastid: 20363867
plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400009432 Potato plastid 94.09 94.09
AT5G66040.1 Thale cress cytosol 38.71 60.0
CDY18582 Canola cytosol 39.78 59.68
CDX81421 Canola cytosol 39.25 58.87
Bra037191.1-P Field mustard cytosol 38.71 58.06
Os06t0725000-01 Rice cytosol 41.4 53.47
TraesCS7A01G545200.1 Wheat cytosol 40.32 53.19
CDX69162 Canola plastid 43.01 52.98
KRH76577 Soybean nucleus 51.61 51.61
GSMUA_Achr11P... Banana mitochondrion 44.09 51.57
VIT_00s0684g00030.t01 Wine grape plastid 50.0 51.38
GSMUA_Achr8P34150_001 Banana plastid 46.24 46.99
Zm00001d014816_P001 Maize plastid 45.7 44.5
Bra011636.1-P Field mustard plastid 42.47 43.41
CDX75524 Canola plastid 41.94 42.86
KRH28873 Soybean endoplasmic reticulum 51.08 42.6
GSMUA_Achr11P... Banana cytosol 30.11 42.11
TraesCS7B01G414600.1 Wheat plastid 41.4 41.62
TraesCS7D01G531400.1 Wheat plastid 41.4 41.62
TraesCS7A01G545100.1 Wheat plastid 41.4 41.62
TraesCS7D01G531600.1 Wheat plastid 43.01 41.24
TraesCS7D01G531800.1 Wheat plastid 41.94 40.84
AT4G35770.1 Thale cress plastid 39.78 40.66
TraesCS7B01G019600.1 Wheat plastid 43.01 40.61
TraesCS7B01G467800.2 Wheat plastid 40.32 40.32
EER90413 Sorghum mitochondrion 39.78 40.0
EER90414 Sorghum plastid 43.55 39.13
TraesCSU01G099000.1 Wheat plastid 33.87 37.72
Solyc02g083730.2.1 Tomato cytosol 25.81 37.21
HORVU0Hr1G022690.3 Barley cytosol 45.16 36.05
TraesCSU01G225200.1 Wheat plastid 30.11 32.94
HORVU0Hr1G022680.1 Barley plastid 41.4 32.49
TraesCS7B01G468400.1 Wheat mitochondrion 38.71 27.69
TraesCS7B01G468600.1 Wheat mitochondrion 38.71 27.69
Protein Annotations
EnsemblPlants:Solyc02g083280.2.1EnsemblPlantsGene:Solyc02g083280.2Gene3D:3.40.250.10InterPro:IPR001763InterPro:IPR036873InterPro:Rhodanese-like_dom
InterPro:Rhodanese-like_dom_sfPANTHER:PTHR45431PFAM:PF00581PFscan:PS50206SMART:SM00450SUPFAM:SSF52821
UniParc:UPI00027684BCUniProt:K4BAJ6MapMan:35.1:::
Description
No Description!
Coordinates
chr2:+:46727836..46730554
Molecular Weight (calculated)
20385.4 Da
IEP (calculated)
7.726
GRAVY (calculated)
-0.154
Length
186 amino acids
Sequence
(BLAST)
001: MRTISLHSTS FSLVEFHGTK NLAQSRINRS VSLIPMARSQ FQPKIRRDIG TSNRNPSFSW MATVGEKVHN STVPTSVPVR VALELLQAGH RYLDVRTTEE
101: YNDGHAAGAI NIPYMLRIGS GMIKNPNFLE EVLEQFGKDD EIIVGCQLGK RSFMAATELL AAGFTGVTDI AGGYAAWTES GLPIES
Best Arabidopsis Sequence Match ( AT4G35770.1 )
(BLAST)
001: METTAFNTTS RIGNWSSAIS PPLQTCGSFK CQLPTRRGVI VADLRNSNFR WRKATTTSRG NVAAEAVKIP TSVPVRVARE LAQAGYRYLD VRTPDEFSIG
101: HPTRAINVPY MYRVGSGMVK NPSFLRQVSS HFRKHDEIII GCESGQMSFM ASTDLLTAGF TAITDIAGGY VAWTENELPV EE
Arabidopsis Description
STR15SEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYD5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.