Factsheet for GSMUA_Achr4P08040_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	66.27	67.88
GSMUA_Achr6P22730_001	Banana	cytosol	60.95	62.42
GSMUA_Achr7P25280_001	Banana	extracellular	60.95	59.2
CDX90174	Canola	cytosol, endoplasmic reticulum	58.58	57.89
CDY43324	Canola	cytosol, endoplasmic reticulum	56.21	54.91
Bra030125.1-P	Field mustard	cytosol, extracellular	57.4	54.8
CDX94651	Canola	cytosol, extracellular	56.8	54.24
CDY15646	Canola	cytosol, extracellular	56.8	54.24
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	56.21	53.98
VIT_10s0003g01310.t01	Wine grape	extracellular	57.99	53.55
TraesCS3D01G295400.1	Wheat	extracellular	59.76	53.16
KRH58967	Soybean	cytosol, golgi	55.03	53.14
Solyc02g076800.1.1	Tomato	extracellular	59.76	52.88
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	59.17	52.63
KRH42866	Soybean	extracellular, plasma membrane	53.85	52.0
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	59.17	51.55
KRH11017	Soybean	extracellular	53.25	51.14
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	58.58	50.77
Zm00001d043399_P001	Maize	extracellular	59.17	50.51
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	57.4	50.26
Os01t0758500-01	Rice	cytosol	57.99	50.26
GSMUA_Achr5P29500_001	Banana	extracellular, vacuole	43.2	50.0
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	52.07	48.62
EES03643	Sorghum	endoplasmic reticulum, extracellular	59.76	48.56
GSMUA_Achr11P...	Banana	cytosol, extracellular	40.83	48.25
PGSC0003DMT400011206	Potato	extracellular	53.25	47.12
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	38.46	46.76
KRH21271	Soybean	cytosol, nucleus, plastid	53.25	46.15
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	38.46	46.1
Zm00001d012700_P001	Maize	extracellular	57.99	45.58
GSMUA_Achr11P...	Banana	cytosol	44.38	45.18
GSMUA_Achr9P04640_001	Banana	extracellular	36.09	40.13

Protein Annotations

EnsemblPlants:GSMUA_Achr4P08040_001	EnsemblPlants:GSMUA_Achr4T08040_001	EnsemblPlantsGene:GSMUA_Achr4G08040_001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF26
PFAM:PF14009	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0002949983	UniProt:M0SM21	MapMan:35.2

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G08040_001]

Coordinates

chr4:-:5943842..5944351

Molecular Weight (calculated)

18584.5 Da

IEP (calculated)

9.809

GRAVY (calculated)

-0.367

Length

169 amino acids

Sequence
(BLAST)

001: MKEAIWCCIS CILPCGALDV IRIVHANGRV EEISGTVSAG EIMQAYPKHV IRKPPSPSSS DGADIPKAVV LPPTAELQKG KIYFLVPVTS AAPEKARSQT
101: PGTRRRKKKK EEAANVDVAA TDKTRLLLSD QYLSEILSEK VSTQRERRRG RVGVWRPHLE SISEVSNDL

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.