CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24170
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	CDY24170	AT3G47620.1	21798944
AT1G29195.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	83.04	80.68
CDY43324	Canola	cytosol, endoplasmic reticulum	80.12	79.19
CDX94651	Canola	cytosol, extracellular	67.84	65.54
CDY15646	Canola	cytosol, extracellular	67.25	64.97
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	66.67	59.07
GSMUA_Achr4P08040_001	Banana	extracellular	57.89	58.58
VIT_10s0003g01310.t01	Wine grape	extracellular	60.82	56.83
KRH11017	Soybean	extracellular	57.31	55.68
KRH58967	Soybean	cytosol, golgi	56.73	55.43
KRH42866	Soybean	extracellular, plasma membrane	54.97	53.71
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	51.46	53.33
GSMUA_Achr6P22730_001	Banana	cytosol	49.71	51.52
Solyc02g076800.1.1	Tomato	extracellular	54.39	48.69
PGSC0003DMT400011206	Potato	extracellular	54.39	48.69
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	53.8	48.42
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	54.97	48.21
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	50.29	47.51
TraesCS3D01G295400.1	Wheat	extracellular	52.63	47.37
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	53.22	46.91
Os01t0758500-01	Rice	cytosol	53.22	46.67
KRH21271	Soybean	cytosol, nucleus, plastid	53.22	46.67
GSMUA_Achr7P25280_001	Banana	extracellular	47.37	46.55
Zm00001d043399_P001	Maize	extracellular	52.05	44.95
CDY24020	Canola	extracellular	41.52	44.94
CDX97836	Canola	extracellular	42.11	44.72
EES03643	Sorghum	endoplasmic reticulum, extracellular	53.8	44.23
CDX84851	Canola	extracellular	40.35	43.67
CDX84850	Canola	extracellular	40.35	43.67
CDY02050	Canola	extracellular	39.77	42.5
CDY10237	Canola	extracellular, golgi	41.52	42.01
CDY54890	Canola	extracellular, golgi	41.52	42.01
CDY29687	Canola	extracellular	43.27	41.34
CDY09944	Canola	extracellular, golgi	40.35	41.32
Zm00001d012700_P001	Maize	extracellular	50.29	40.0
CDX86506	Canola	extracellular, golgi	39.18	39.88
CDY15595	Canola	extracellular, golgi	37.43	39.02

Protein Annotations

EnsemblPlants:CDX90174	EnsemblPlantsGene:GSBRNA2T00150721001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF26	PFAM:PF14009
ProteinID:CDX90174	ProteinID:CDX90174.1	UniParc:UPI0004EE034A	MapMan:35.2	:	:

Description

BnaA08g18100D

Coordinates

chrLK031862:+:479650..480165

Molecular Weight (calculated)

19239.2 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.622

Length

171 amino acids

Sequence
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIIHSNGHV EEISGTITAG EVMKAHPKHV LKKPSSSQSD HQERGDLISA TKIVIVPPEA ELQRGKIYFL VPAAKSDKRN
101: AKAVKKRSQT RRQREEGADN CKDKSYDKDV SLLISDRYLT EILSEKIATQ KERRKGRVGV WRPHLESINE D

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.