Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G295400.1 | Wheat | extracellular | 96.84 | 96.84 |
| TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 86.84 | 85.05 |
| HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 76.84 | 74.87 |
| Zm00001d043399_P001 | Maize | extracellular | 77.89 | 74.75 |
| Os01t0758500-01 | Rice | cytosol | 73.68 | 71.79 |
| EES03643 | Sorghum | endoplasmic reticulum, extracellular | 73.16 | 66.83 |
| GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 51.58 | 59.39 |
| GSMUA_Achr4P08040_001 | Banana | extracellular | 52.63 | 59.17 |
| Zm00001d012700_P001 | Maize | extracellular | 64.21 | 56.74 |
| CDY43324 | Canola | cytosol, endoplasmic reticulum | 50.0 | 54.91 |
| Bra010845.1-P | Field mustard | cytosol, endoplasmic reticulum | 50.0 | 53.98 |
| CDX90174 | Canola | cytosol, endoplasmic reticulum | 48.42 | 53.8 |
| Bra030125.1-P | Field mustard | cytosol, extracellular | 50.0 | 53.67 |
| CDY15646 | Canola | cytosol, extracellular | 49.47 | 53.11 |
| VIT_10s0003g01310.t01 | Wine grape | extracellular | 51.05 | 53.01 |
| CDX94651 | Canola | cytosol, extracellular | 48.95 | 52.54 |
| GSMUA_Achr6P22730_001 | Banana | cytosol | 45.26 | 52.12 |
| KRH42866 | Soybean | extracellular, plasma membrane | 47.89 | 52.0 |
| KRH58967 | Soybean | cytosol, golgi | 46.84 | 50.86 |
| GSMUA_Achr7P25280_001 | Banana | extracellular | 45.79 | 50.0 |
| KRH11017 | Soybean | extracellular | 45.79 | 49.43 |
| Solyc02g076800.1.1 | Tomato | extracellular | 49.47 | 49.21 |
| AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 47.89 | 47.15 |
| Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 44.74 | 46.96 |
| PGSC0003DMT400011206 | Potato | extracellular | 46.84 | 46.6 |
| KRH21271 | Soybean | cytosol, nucleus, plastid | 47.37 | 46.15 |
| TraesCS1B01G131700.1 | Wheat | extracellular | 34.21 | 38.24 |
| TraesCS3B01G379600.1 | Wheat | extracellular | 32.11 | 37.42 |
| TraesCS4B01G189400.1 | Wheat | extracellular, vacuole | 32.63 | 36.47 |
| TraesCS3B01G115000.1 | Wheat | extracellular | 32.11 | 36.09 |
| TraesCS1B01G307800.1 | Wheat | extracellular, vacuole | 31.05 | 33.33 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G330000.1 | EnsemblPlantsGene:TraesCS3B01G330000 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF3 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:533453519..533454444
Molecular Weight (calculated)
20486.9 Da
IEP (calculated)
10.005
GRAVY (calculated)
-0.376
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: METIRCCIAC ILPCGALDVV RIVHSNGRVE EISEPVLAGE IMKAYPKHVL RKPPSTCPSD GGGGIVVQKP VILPPNAELQ KGKIYFLMPV MAPAPDKAAA
101: KPKAPAPAPT AAAPAARRRR RRKESGEAAA GNNAPAASLQ SAEGEKERLL ANERYLSEIM KEKASTARDR RRGRVAVWRP HLESITEDDL
101: KPKAPAPAPT AAAPAARRRR RRKESGEAAA GNNAPAASLQ SAEGEKERLL ANERYLSEIM KEKASTARDR RRGRVAVWRP HLESITEDDL
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]
SUBAcon: [endoplasmic reticulum,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.