Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G190800.1 | Wheat | extracellular | 94.12 | 94.12 |
| HORVU4Hr1G055090.1 | Barley | extracellular | 91.18 | 91.18 |
| TraesCS4A01G114800.1 | Wheat | extracellular | 90.59 | 89.53 |
| Zm00001d028798_P001 | Maize | extracellular, vacuole | 65.88 | 69.57 |
| EER95013 | Sorghum | extracellular, vacuole | 64.12 | 65.27 |
| Os03t0298100-00 | Rice | cytosol, extracellular | 64.12 | 61.24 |
| GSMUA_Achr6P32750_001 | Banana | extracellular, vacuole | 46.47 | 56.03 |
| VIT_06s0004g07460.t01 | Wine grape | extracellular, golgi | 47.65 | 54.73 |
| GSMUA_Achr5P28030_001 | Banana | cytosol, extracellular | 44.71 | 54.68 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular | 44.71 | 53.15 |
| Solyc06g007370.1.1 | Tomato | extracellular | 47.65 | 50.94 |
| CDX97836 | Canola | extracellular | 48.24 | 50.93 |
| CDY24020 | Canola | extracellular | 46.47 | 50.0 |
| CDY02050 | Canola | extracellular | 47.06 | 50.0 |
| CDY15595 | Canola | extracellular, golgi | 47.65 | 49.39 |
| TraesCS1B01G131700.1 | Wheat | extracellular | 48.82 | 48.82 |
| Bra030668.1-P | Field mustard | extracellular, golgi | 47.06 | 48.78 |
| CDX84851 | Canola | extracellular | 45.29 | 48.73 |
| CDX84850 | Canola | extracellular | 45.29 | 48.73 |
| GSMUA_Achr9P04640_001 | Banana | extracellular | 42.94 | 48.03 |
| CDY10237 | Canola | extracellular, golgi | 47.65 | 47.93 |
| KRH30160 | Soybean | extracellular | 47.06 | 47.9 |
| CDY09944 | Canola | extracellular, golgi | 46.47 | 47.31 |
| CDX86506 | Canola | extracellular, golgi | 46.47 | 47.02 |
| Bra021621.1-P | Field mustard | extracellular | 49.41 | 46.93 |
| CDY54890 | Canola | extracellular, golgi | 46.47 | 46.75 |
| Bra015540.1-P | Field mustard | extracellular, golgi | 46.47 | 46.75 |
| Bra031549.1-P | Field mustard | extracellular, golgi | 45.88 | 46.71 |
| KRH17122 | Soybean | extracellular, golgi | 45.88 | 46.71 |
| PGSC0003DMT400052957 | Potato | extracellular | 45.29 | 46.67 |
| CDY29687 | Canola | extracellular | 48.82 | 46.37 |
| KRG98199 | Soybean | extracellular | 44.71 | 46.06 |
| Bra022784.1-P | Field mustard | extracellular | 47.65 | 46.02 |
| AT1G06980.1 | Thale cress | extracellular, golgi | 45.29 | 45.56 |
| Bra018326.1-P | Field mustard | extracellular | 47.65 | 45.51 |
| AT2G30230.1 | Thale cress | extracellular | 46.47 | 44.63 |
| TraesCS3B01G115000.1 | Wheat | extracellular | 43.53 | 43.79 |
| KRH72764 | Soybean | extracellular | 42.94 | 42.69 |
| TraesCS1B01G307800.1 | Wheat | extracellular, vacuole | 43.53 | 41.81 |
| TraesCS3B01G379600.1 | Wheat | extracellular | 40.0 | 41.72 |
| TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 36.47 | 32.63 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G189400.1 | EnsemblPlantsGene:TraesCS4B01G189400 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF7 | PFAM:PF14009 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:412083764..412084808
Molecular Weight (calculated)
18440.2 Da
IEP (calculated)
9.670
GRAVY (calculated)
-0.338
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNSLRCCLA CVLPCGSFDL IRIVHLNGHI EEYSRPVTAG EVMAAHPSHV VSRPCSQGGA RRILIVDADS ELERGCFYFL VPTSSVPEKK RKPSSQPQQK
101: KVRSSSTLKP TSVPSSAGAG ANKVTKDRGA GDSYLAEVLS EGKARCKRSR SVRATVWRPH LQIIPEEALE
101: KVRSSSTLKP TSVPSSAGAG ANKVTKDRGA GDSYLAEVLS EGKARCKRSR SVRATVWRPH LQIIPEEALE
001: MGNSLRCCLA CVLPCGALDL IRIVHLNGYV EEITRSITAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDSSLPEKK RRRKDTPRRK
101: KNLQNPSADA AGREIKGDEE CVKLCEKYLE EVVSSASTGK EHRHRRRHSR SASVSTWRPL LDSISEDLN
101: KNLQNPSADA AGREIKGDEE CVKLCEKYLE EVVSSASTGK EHRHRRRHSR SASVSTWRPL LDSISEDLN
Arabidopsis Description
6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:Q9LMJ2]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.