Factsheet for VIT_06s0004g07460.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	62.84	65.96
KRG98199	Soybean	extracellular	72.3	64.85
KRH30160	Soybean	extracellular	72.97	64.67
KRH17122	Soybean	extracellular, golgi	70.95	62.87
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	58.78	62.59
GSMUA_Achr5P29500_001	Banana	extracellular, vacuole	60.81	61.64
CDY24020	Canola	extracellular	65.54	61.39
CDY10237	Canola	extracellular, golgi	69.59	60.95
CDX97836	Canola	extracellular	66.22	60.87
GSMUA_Achr11P...	Banana	cytosol, extracellular	58.78	60.84
CDY15595	Canola	extracellular, golgi	66.89	60.37
Bra015540.1-P	Field mustard	extracellular, golgi	68.92	60.35
CDY54890	Canola	extracellular, golgi	68.92	60.35
CDX84851	Canola	extracellular	64.19	60.13
CDX84850	Canola	extracellular	64.19	60.13
CDY02050	Canola	extracellular	64.86	60.0
Zm00001d009826_P001	Maize	extracellular	59.46	59.86
Bra030668.1-P	Field mustard	extracellular, golgi	65.54	59.15
AT1G06980.1	Thale cress	extracellular, golgi	66.89	58.58
TraesCS1D01G112900.1	Wheat	extracellular	66.22	57.65
AT2G30230.1	Thale cress	extracellular	68.92	57.63
TraesCS1A01G111500.1	Wheat	extracellular	65.54	57.06
CDY09944	Canola	extracellular, golgi	64.19	56.89
Bra022784.1-P	Field mustard	extracellular	67.57	56.82
Bra018326.1-P	Field mustard	extracellular	68.24	56.74
Solyc06g007370.1.1	Tomato	extracellular	60.81	56.6
CDX86506	Canola	extracellular, golgi	64.19	56.55
TraesCS1B01G131700.1	Wheat	extracellular	64.86	56.47
CDY29687	Canola	extracellular	68.24	56.42
PGSC0003DMT400052957	Potato	extracellular	62.84	56.36
Bra031549.1-P	Field mustard	extracellular, golgi	63.51	56.29
Bra021621.1-P	Field mustard	extracellular	67.57	55.87
KRH72764	Soybean	extracellular	63.51	54.97
EER95013	Sorghum	extracellular, vacuole	61.49	54.49
GSMUA_Achr11P...	Banana	cytosol	60.81	54.22
Zm00001d028798_P001	Maize	extracellular, vacuole	58.11	53.42
EES17778	Sorghum	extracellular, golgi	61.49	52.91
Os05t0165200-00	Rice	extracellular	59.46	51.76
Os01t0165600-00	Rice	extracellular, golgi, mitochondrion, nucleus	55.41	48.24
TraesCS4D01G190800.1	Wheat	extracellular	55.41	48.24
Os01t0826800-01	Rice	vacuole	55.41	47.95
HORVU4Hr1G055090.1	Barley	extracellular	54.73	47.65
TraesCS4B01G189400.1	Wheat	extracellular, vacuole	54.73	47.65
GSMUA_Achr9P04640_001	Banana	extracellular	48.65	47.37
Os03t0298100-00	Rice	cytosol, extracellular	55.41	46.07
TraesCS4A01G114800.1	Wheat	extracellular	53.38	45.93
Zm00001d039735_P001	Maize	extracellular	55.41	45.81
Os05t0474700-01	Rice	extracellular	52.03	45.03
Zm00001d043024_P001	Maize	extracellular	51.35	44.71
TraesCS3A01G347700.1	Wheat	extracellular	50.68	44.64
EES18380	Sorghum	extracellular	56.08	44.62
TraesCS3B01G115000.1	Wheat	extracellular	50.68	44.38
EES02407	Sorghum	extracellular, golgi, plasma membrane	54.73	44.02
TraesCS1D01G292900.1	Wheat	extracellular	52.03	44.0
Zm00001d038450_P001	Maize	vacuole	52.03	43.75
TraesCS3B01G379600.1	Wheat	extracellular	47.97	43.56
EES03819	Sorghum	extracellular	52.03	43.5
TraesCS3D01G099200.1	Wheat	extracellular	49.32	43.45
VIT_10s0003g01310.t01	Wine grape	extracellular	53.38	43.17
Zm00001d012480_P001	Maize	extracellular	50.68	43.1
TraesCS3D01G341300.1	Wheat	extracellular	47.97	42.77
TraesCS3A01G098800.1	Wheat	extracellular	48.65	42.35
TraesCS1B01G307800.1	Wheat	extracellular, vacuole	49.32	41.24
TraesCS1A01G298300.1	Wheat	extracellular, vacuole	48.65	40.68
Os04t0630700-01	Rice	cytosol	20.95	28.7

Protein Annotations

EntrezGene:100260457	wikigene:100260457	MapMan:35.2	EMBL:AM450229	ProteinID:CAN59819	ProteinID:CAN59819.1
ProteinID:CCB43435	ProteinID:CCB43435.1	InterPro:DUF4228_plant	UniProt:F6GUI1	EMBL:FN594951	EntrezGene:LOC100260457
wikigene:LOC100260457	PFAM:PF14009	PANTHER:PTHR33052	PANTHER:PTHR33052:SF26	SignalP:SignalP-noTM	UniParc:UPI00015C7530
ArrayExpress:VIT_06s0004g07460	EnsemblPlantsGene:VIT_06s0004g07460	EnsemblPlants:VIT_06s0004g07460.t01	RefSeq:XP_002272573	RefSeq:XP_002272573.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:8261750..8262353

Molecular Weight (calculated)

16209.7 Da

IEP (calculated)

10.288

GRAVY (calculated)

-0.368

Length

148 amino acids

Sequence
(BLAST)

001: MGNSLRCCLA CVLPCGALDL IRIVHLSGYV EEIARPVTAG EILQAHPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPATSLPEKK RSGSGSNPKK
101: SSKKSSRKCN TDVGSTEMIS EKKSSRRDRR SSGRVGVWRP HLESILED

Best Arabidopsis Sequence Match ( AT2G30230.1 )
(BLAST)

001: MGNSLRCCLA CVLPCGALDL IRIVHLNGHV DEITSPMTAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDTSMPEKK KTKKRKELRC
101: RKKPLESGND INSDHVSTNK DLDGHCLTLC EKYLEDVMLS EKMSSAGKEN RHRRKHSRSA SVSTWRPHLD SITEDLN

Arabidopsis Description

6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:O22919]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.