Factsheet for TraesCS3B01G379600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, plastid
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G341300.1	Wheat	extracellular	86.5	84.94
TraesCS3A01G347700.1	Wheat	extracellular	86.5	83.93
Os01t0826800-01	Rice	vacuole	70.55	67.25
EES03819	Sorghum	extracellular	68.71	63.28
Zm00001d043024_P001	Maize	extracellular	65.03	62.35
Zm00001d012480_P001	Maize	extracellular	65.64	61.49
GSMUA_Achr11P...	Banana	cytosol, extracellular	47.24	53.85
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	43.56	51.08
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	44.17	51.06
TraesCS1B01G307800.1	Wheat	extracellular, vacuole	53.99	49.72
VIT_06s0004g07460.t01	Wine grape	extracellular, golgi	43.56	47.97
KRH17122	Soybean	extracellular, golgi	43.56	42.52
KRG98199	Soybean	extracellular	41.1	40.61
KRH72764	Soybean	extracellular	42.33	40.35
TraesCS3B01G115000.1	Wheat	extracellular	41.72	40.24
AT1G06980.1	Thale cress	extracellular, golgi	41.72	40.24
TraesCS4B01G189400.1	Wheat	extracellular, vacuole	41.72	40.0
CDX97836	Canola	extracellular	39.26	39.75
CDY54890	Canola	extracellular, golgi	41.1	39.65
KRH30160	Soybean	extracellular	40.49	39.52
PGSC0003DMT400052957	Potato	extracellular	39.88	39.39
Solyc06g007370.1.1	Tomato	extracellular	38.04	38.99
TraesCS1B01G131700.1	Wheat	extracellular	40.49	38.82
GSMUA_Achr9P04640_001	Banana	extracellular	36.2	38.82
CDY10237	Canola	extracellular, golgi	39.88	38.46
CDY09944	Canola	extracellular, golgi	39.26	38.32
CDY02050	Canola	extracellular	37.42	38.12
CDY29687	Canola	extracellular	41.72	37.99
CDX84850	Canola	extracellular	36.81	37.97
CDY24020	Canola	extracellular	36.81	37.97
CDX84851	Canola	extracellular	36.81	37.97
Bra030668.1-P	Field mustard	extracellular, golgi	38.04	37.8
Bra031549.1-P	Field mustard	extracellular, golgi	38.65	37.72
AT2G30230.1	Thale cress	extracellular	40.49	37.29
Bra015540.1-P	Field mustard	extracellular, golgi	38.65	37.28
Bra018326.1-P	Field mustard	extracellular	40.49	37.08
Bra022784.1-P	Field mustard	extracellular	39.88	36.93
CDX86506	Canola	extracellular, golgi	38.04	36.9
Bra021621.1-P	Field mustard	extracellular	40.49	36.87
CDY15595	Canola	extracellular, golgi	36.2	35.98
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	37.42	32.11

Protein Annotations

EnsemblPlants:TraesCS3B01G379600.1	EnsemblPlantsGene:TraesCS3B01G379600	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF14	PFAM:PF14009
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:597461392..597461883

Molecular Weight (calculated)

17624.2 Da

IEP (calculated)

9.989

GRAVY (calculated)

-0.390

Length

163 amino acids

Sequence
(BLAST)

001: MGNSLRCCLT CMLPCGSFDV VRIVHLSGRV DEFSCPITGG AVLAEHPNHT IATAWSSAGV GCPTKKLVIV SPDTELKRGR IYFLIPSATV PAADRRKKSR
101: PGSKKSKRPS SRGKSGGTAE QDNYLTELLS EKTASGAHRR RRSGCRVGVW RPELESIVEE ASE

Best Arabidopsis Sequence Match ( AT2G30230.1 )
(BLAST)

001: MGNSLRCCLA CVLPCGALDL IRIVHLNGHV DEITSPMTAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDTSMPEKK KTKKRKELRC
101: RKKPLESGND INSDHVSTNK DLDGHCLTLC EKYLEDVMLS EKMSSAGKEN RHRRKHSRSA SVSTWRPHLD SITEDLN

Arabidopsis Description

6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:O22919]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.