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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 6
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi
Any Predictor:cytosol, nucleus, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY15595 Canola extracellular, golgi 88.41 88.41
Bra031549.1-P Field mustard extracellular, golgi 79.27 77.84
AT1G06980.1 Thale cress extracellular, golgi 79.27 76.92
Bra015540.1-P Field mustard extracellular, golgi 68.29 66.27
VIT_06s0004g07460.t01 Wine grape extracellular, golgi 59.15 65.54
Bra018326.1-P Field mustard extracellular 70.73 65.17
Bra022784.1-P Field mustard extracellular 68.29 63.64
Bra021621.1-P Field mustard extracellular 68.9 63.13
GSMUA_Achr6P32750_001 Banana extracellular, vacuole 50.61 58.87
KRH17122 Soybean extracellular, golgi 59.15 58.08
Zm00001d009826_P001 Maize extracellular 50.0 55.78
KRG98199 Soybean extracellular 56.1 55.76
KRH30160 Soybean extracellular 56.71 55.69
GSMUA_Achr5P29500_001 Banana extracellular, vacuole 49.39 55.48
Solyc06g007370.1.1 Tomato extracellular 53.66 55.35
GSMUA_Achr5P28030_001 Banana cytosol, extracellular 46.34 54.68
GSMUA_Achr11P... Banana cytosol, extracellular 46.95 53.85
PGSC0003DMT400052957 Potato extracellular 53.66 53.33
KRH72764 Soybean extracellular 55.49 53.22
TraesCS1D01G112900.1 Wheat extracellular 53.05 51.18
TraesCS1A01G111500.1 Wheat extracellular 52.44 50.59
TraesCS1B01G131700.1 Wheat extracellular 52.44 50.59
GSMUA_Achr11P... Banana cytosol 50.61 50.0
EES17778 Sorghum extracellular, golgi 51.83 49.42
HORVU4Hr1G055090.1 Barley extracellular 50.61 48.82
Zm00001d028798_P001 Maize extracellular, vacuole 47.56 48.45
EER95013 Sorghum extracellular, vacuole 48.78 47.9
Os03t0298100-00 Rice cytosol, extracellular 51.83 47.75
TraesCS4A01G114800.1 Wheat extracellular 50.0 47.67
TraesCS4D01G190800.1 Wheat extracellular 49.39 47.65
TraesCS4B01G189400.1 Wheat extracellular, vacuole 48.78 47.06
Os01t0165600-00 Rice extracellular, golgi, mitochondrion, nucleus 48.17 46.47
Os05t0165200-00 Rice extracellular 48.17 46.47
Zm00001d039735_P001 Maize extracellular 48.78 44.69
GSMUA_Achr9P04640_001 Banana extracellular 40.85 44.08
TraesCS3D01G099200.1 Wheat extracellular 45.12 44.05
EES02407 Sorghum extracellular, golgi, plasma membrane 49.39 44.02
TraesCS3B01G115000.1 Wheat extracellular 45.12 43.79
TraesCS3A01G098800.1 Wheat extracellular 45.12 43.53
Os01t0826800-01 Rice vacuole 43.9 42.11
Zm00001d043024_P001 Maize extracellular 41.46 40.0
Os05t0474700-01 Rice extracellular 41.46 39.77
Bra030125.1-P Field mustard cytosol, extracellular 42.07 38.98
EES03819 Sorghum extracellular 41.46 38.42
TraesCS3B01G379600.1 Wheat extracellular 37.8 38.04
TraesCS1B01G307800.1 Wheat extracellular, vacuole 40.85 37.85
TraesCS1D01G292900.1 Wheat extracellular 40.24 37.71
TraesCS3A01G347700.1 Wheat extracellular 38.41 37.5
Zm00001d012480_P001 Maize extracellular 39.63 37.36
TraesCS3D01G341300.1 Wheat extracellular 37.8 37.35
TraesCS1A01G298300.1 Wheat extracellular, vacuole 40.24 37.29
EES18380 Sorghum extracellular 42.07 37.1
Zm00001d038450_P001 Maize vacuole 39.63 36.93
Bra010845.1-P Field mustard cytosol, endoplasmic reticulum 39.02 36.36
Os04t0630700-01 Rice cytosol 19.51 29.63
Protein Annotations
EnsemblPlants:Bra030668.1EnsemblPlants:Bra030668.1-PEnsemblPlantsGene:Bra030668InterPro:DUF4228_plantPANTHER:PTHR33052PANTHER:PTHR33052:SF26
PFAM:PF14009SEG:segSignalP:SignalP-noTMUniParc:UPI0002546F4BUniProt:M4EPE8MapMan:35.2
Description
AT1G06980 (E=1e-062) | unknown protein
Coordinates
chrA08:+:20883465..20883959
Molecular Weight (calculated)
18250.9 Da
IEP (calculated)
9.404
GRAVY (calculated)
-0.573
Length
164 amino acids
Sequence
(BLAST)
001: MGNSLRCCLA CVLPCGALDL IRIVHLNGHI DEITRSITAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDSSLPEKK RRRKEGHSPN
101: KTPNNNPKAD LGEVKDVKQC EKYLEGVVAS TSNGKEQRHR RRHSRSVSVS SWQPHLDSIS EDLN
Best Arabidopsis Sequence Match ( AT1G06980.1 )
(BLAST)
001: MGNSLRCCLA CVLPCGALDL IRIVHLNGYV EEITRSITAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDSSLPEKK RRRKDTPRRK
101: KNLQNPSADA AGREIKGDEE CVKLCEKYLE EVVSSASTGK EHRHRRRHSR SASVSTWRPL LDSISEDLN
Arabidopsis Description
6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:Q9LMJ2]
SUBAcon: [golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.