Factsheet for TraesCS1A01G298300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G307800.1	Wheat	extracellular, vacuole	97.74	97.74
TraesCS1D01G292900.1	Wheat	extracellular	83.05	84.0
Os05t0474700-01	Rice	extracellular	69.49	71.93
Zm00001d038450_P001	Maize	vacuole	63.28	63.64
EES18380	Sorghum	extracellular	62.71	59.68
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	44.63	56.83
TraesCS3A01G347700.1	Wheat	extracellular	51.98	54.76
GSMUA_Achr11P...	Banana	cytosol, extracellular	43.5	53.85
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	42.37	53.19
VIT_06s0004g07460.t01	Wine grape	extracellular, golgi	40.68	48.65
Solyc06g007370.1.1	Tomato	extracellular	40.11	44.65
KRH72764	Soybean	extracellular	42.94	44.44
TraesCS4A01G114800.1	Wheat	extracellular	42.94	44.19
TraesCS1A01G111500.1	Wheat	extracellular	42.37	44.12
GSMUA_Achr9P04640_001	Banana	extracellular	37.85	44.08
KRG98199	Soybean	extracellular	40.68	43.64
CDY02050	Canola	extracellular	38.98	43.12
KRH17122	Soybean	extracellular, golgi	40.68	43.11
TraesCS3A01G098800.1	Wheat	extracellular	41.24	42.94
CDX97836	Canola	extracellular	38.98	42.86
PGSC0003DMT400052957	Potato	extracellular	39.55	42.42
CDX84851	Canola	extracellular	37.85	42.41
CDX84850	Canola	extracellular	37.85	42.41
CDY24020	Canola	extracellular	37.85	42.41
AT1G06980.1	Thale cress	extracellular, golgi	39.55	41.42
Bra015540.1-P	Field mustard	extracellular, golgi	39.55	41.42
CDY10237	Canola	extracellular, golgi	39.55	41.42
KRH30160	Soybean	extracellular	38.98	41.32
CDY09944	Canola	extracellular, golgi	38.98	41.32
Bra031549.1-P	Field mustard	extracellular, golgi	38.98	41.32
AT2G30230.1	Thale cress	extracellular	40.68	40.68
CDX86506	Canola	extracellular, golgi	38.42	40.48
Bra022784.1-P	Field mustard	extracellular	40.11	40.34
Bra030668.1-P	Field mustard	extracellular, golgi	37.29	40.24
CDY54890	Canola	extracellular, golgi	38.42	40.24
Bra018326.1-P	Field mustard	extracellular	39.55	39.33
CDY29687	Canola	extracellular	39.55	39.11
Bra021621.1-P	Field mustard	extracellular	39.55	39.11
CDY15595	Canola	extracellular, golgi	36.16	39.02
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	33.9	30.93

Protein Annotations

EnsemblPlants:TraesCS1A01G298300.1	EnsemblPlantsGene:TraesCS1A01G298300	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF16	PFAM:PF14009
SEG:seg	SignalP:SignalP-noTM	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1A:+:493266820..493267353

Molecular Weight (calculated)

19162.8 Da

IEP (calculated)

9.517

GRAVY (calculated)

-0.466

Length

177 amino acids

Sequence
(BLAST)

001: MGNSLRCCLA CMLPCGALDV VRVVHLSGHV DEFTCPLIAS DVLAAHPSHA LTAAGSAGAA RRIVIVSPDS ELRRGRIYFL IPTACSAPAA ELKRPKQQQQ
101: QQGHGECQSK TKRRHGHGHR KGGAAVAAAA STAEQDNYLR ELLSEKRESD HRRRRSSSAR AGVWRPRLES IAEEPSD

Best Arabidopsis Sequence Match ( AT2G30230.1 )
(BLAST)

001: MGNSLRCCLA CVLPCGALDL IRIVHLNGHV DEITSPMTAG EILQANPNHV LSKPCSQGVV RKILILSPES ELKRGSIYFL IPDTSMPEKK KTKKRKELRC
101: RKKPLESGND INSDHVSTNK DLDGHCLTLC EKYLEDVMLS EKMSSAGKEN RHRRKHSRSA SVSTWRPHLD SITEDLN

Arabidopsis Description

6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:O22919]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.